diff options
Diffstat (limited to 'gn3/computations')
-rw-r--r-- | gn3/computations/gemma.py | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 03e1a76..5a2616b 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -1,4 +1,5 @@ """Procedures related gemma computations""" +import errno import os from base64 import b64encode @@ -40,11 +41,14 @@ def generate_pheno_txt_file(trait_filename: str, return f"{tmpdir}/gn2/{trait_filename}" -def do_paths_exist(paths: ValuesView) -> bool: - """Given a list of PATHS, return False if any of them do not exist.""" +def assert_paths_exist(paths: ValuesView) -> bool: + """Given a list of PATHS, throw error if any of them do not exist.""" for path in paths: if not os.path.isfile(path): - return False + if throw_error: + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), path) + else: + return False return True |