diff options
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/gemma.py | 13 |
1 files changed, 1 insertions, 12 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 5a2616b..2c367ff 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -8,7 +8,7 @@ from typing import Optional, Dict from typing import List from typing import ValuesView from gn3.commands import compose_gemma_cmd -from gn3.fs_helpers import get_hash_of_files +from gn3.fs_helpers import get_hash_of_files, assert_paths_exist def generate_hash_of_string(unhashed_str: str) -> str: @@ -41,17 +41,6 @@ def generate_pheno_txt_file(trait_filename: str, return f"{tmpdir}/gn2/{trait_filename}" -def assert_paths_exist(paths: ValuesView) -> bool: - """Given a list of PATHS, throw error if any of them do not exist.""" - for path in paths: - if not os.path.isfile(path): - if throw_error: - raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), path) - else: - return False - return True - - # pylint: disable=R0913 def generate_gemma_cmd(gemma_cmd: str, output_dir: str, |