diff options
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/rust_correlation.py | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index a8dc256..bf2d1a8 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -8,9 +8,6 @@ import subprocess import json import os - -from typing import Optional - from gn3.computations.qtlreaper import create_output_directory from gn3.random import random_string from gn3.settings import CORRELATION_COMMAND @@ -149,6 +146,9 @@ def parse_tissue_corr_data(symbol_name: str, symbol_dict: dict[list[str, list[str]]], dataset_symbols: dict[str, str], dataset_vals: dict[str, list[str, str]]): + """parset tissue data input""" + + results = None if symbol_name and symbol_name.lower() in symbol_dict: x_vals = ",".join([str(val) @@ -165,11 +165,13 @@ def parse_tissue_corr_data(symbol_name: str, data.append(",".join([str(x) for x in corr_vals])) - except Exception as e: + except AttributeError: pass - return (x_vals, data) + results = (x_vals, data) + + return results -def parse_lit_corr_data(trait, dataset): - pass +def parse_lit_corr_data(_trait, _dataset): + """todo:parse lit data""" |