diff options
Diffstat (limited to 'gn3/computations/wgcna.py')
| -rw-r--r-- | gn3/computations/wgcna.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gn3/computations/wgcna.py b/gn3/computations/wgcna.py index c985491..01aaedb 100644 --- a/gn3/computations/wgcna.py +++ b/gn3/computations/wgcna.py @@ -55,17 +55,17 @@ def process_image(image_loc: str) -> bytes: return b"" -def compose_wgcna_cmd(rscript_path: str, temp_file_path: str): +def compose_rscript_cmd(rscript_path: str, temp_file_path: str): """function to componse wgcna cmd""" # (todo):issue relative paths to abs paths - cmd = f"Rscript ./scripts/{rscript_path} {temp_file_path}" + cmd = f'"Rscript ./scripts/{rscript_path} {temp_file_path}"' return cmd def call_wgcna_script(rscript_path: str, request_data: dict): """function to call wgcna script""" generated_file = dump_wgcna_data(request_data) - cmd = compose_wgcna_cmd(rscript_path, generated_file) + cmd = compose_rscript_cmd(rscript_path, generated_file) # stream_cmd_output(request_data, cmd) disable streaming of data |