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Diffstat (limited to 'gn3/computations/traits.py')
-rw-r--r-- | gn3/computations/traits.py | 56 |
1 files changed, 0 insertions, 56 deletions
diff --git a/gn3/computations/traits.py b/gn3/computations/traits.py deleted file mode 100644 index 1aa2970..0000000 --- a/gn3/computations/traits.py +++ /dev/null @@ -1,56 +0,0 @@ -"""module contains all operating related to traits""" -from gn3.computations.datasets import retrieve_trait_sample_data - - -def fetch_trait(dataset, trait_name: str, database) -> dict: - """this method creates a trait by\ - fetching required data given the\ - dataset and trait_name""" - - created_trait = { - "dataset": dataset, - "trait_name": trait_name - } - - trait_data = get_trait_sample_data(dataset, trait_name, database) - - created_trait["trait_data"] = trait_data - - return created_trait - - -def get_trait_sample_data(trait_dataset, trait_name, database) -> dict: - """first try to fetch the traits sample data from redis if that\ - try to fetch from the traits dataset redis is only used for\ - temp dataset type which is not used in this case """ - - sample_results = retrieve_trait_sample_data( - trait_dataset, trait_name, database) - - trait_data = {} - - for (name, sample_value, _variance, _numcase, _name2) in sample_results: - - trait_data[name] = sample_value - return trait_data - - -def get_trait_info_data(trait_dataset, - trait_name: str, - database_instance, - get_qtl_info: bool = False) -> dict: - """given a dataset and trait_name return a dict containing all info\ - regarding the get trait""" - - _temp_var_holder = (trait_dataset, trait_name, - database_instance, get_qtl_info) - trait_info_data = { - "description": "", - "chr": "", - "locus": "", - "mb": "", - "abbreviation": "", - "trait_display_name": "" - - } - return trait_info_data |