diff options
Diffstat (limited to 'gn3/computations/rust_correlation.py')
| -rw-r--r-- | gn3/computations/rust_correlation.py | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index 246c059..23fdf42 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -67,13 +67,11 @@ def parse_correlation_output(result_file: str, def __parse_line__(line): (trait_name, corr_coeff, p_val, num_overlap) = line.rstrip().split(",") if corr_type == "sample": - return ( - trait_name, - { + return (trait_name, { "num_overlap": num_overlap, "corr_coefficient": corr_coeff, "p_value": p_val - }) + }) if corr_type == "tissue": return ( @@ -93,7 +91,6 @@ def parse_correlation_output(result_file: str, return [] - def get_samples(all_samples: dict[str, str], base_samples: list[str], excluded: list[str]): |