diff options
Diffstat (limited to 'gn3/computations/rqtl.py')
| -rw-r--r-- | gn3/computations/rqtl.py | 5 |
1 files changed, 2 insertions, 3 deletions
diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index e81aba3..65ee6de 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -53,7 +53,7 @@ def process_rqtl_mapping(file_name: str) -> List: # Later I should probably redo this using csv.read to avoid the # awkwardness with removing quotes with [1:-1] with open(os.path.join(current_app.config.get("TMPDIR", "/tmp"), - "output", file_name), "r") as the_file: + "output", file_name), "r", encoding="utf-8") as the_file: for line in the_file: line_items = line.split(",") if line_items[1][1:-1] == "chr" or not line_items: @@ -118,7 +118,6 @@ def pairscan_for_figure(file_name: str) -> Dict: return figure_data - def get_marker_list(map_file: str) -> List: """ Open the map file with the list of markers/pseudomarkers and create list of marker obs @@ -255,7 +254,7 @@ def process_perm_output(file_name: str) -> Tuple[List, float, float]: perm_results = [] with open(os.path.join(current_app.config.get("TMPDIR", "/tmp"), - "output", "PERM_" + file_name), "r") as the_file: + "output", "PERM_" + file_name), "r", encoding="utf-8") as the_file: for i, line in enumerate(the_file): if i == 0: # Skip header line |