diff options
Diffstat (limited to 'gn3/computations/qtlreaper.py')
| -rw-r--r-- | gn3/computations/qtlreaper.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py index 8b2893e..166d2dd 100644 --- a/gn3/computations/qtlreaper.py +++ b/gn3/computations/qtlreaper.py @@ -9,17 +9,17 @@ from typing import Union from gn3.random import random_string from gn3.settings import TMPDIR, REAPER_COMMAND -def generate_traits_file(strains, trait_values, traits_filename): +def generate_traits_file(samples, trait_values, traits_filename): """ Generate a traits file for use with `qtlreaper`. PARAMETERS: - strains: A list of strains to use as the headers for the various columns. - trait_values: A list of lists of values for each trait and strain. + samples: A list of samples to use as the headers for the various columns. + trait_values: A list of lists of values for each trait and sample. traits_filename: The tab-separated value to put the values in for computation of QTLs. """ - header = "Trait\t{}\n".format("\t".join(strains)) + header = "Trait\t{}\n".format("\t".join(samples)) data = ( [header] + ["{}\t{}\n".format(i+1, "\t".join([str(i) for i in t])) |