diff options
Diffstat (limited to 'gn3/computations/qtlreaper.py')
| -rw-r--r-- | gn3/computations/qtlreaper.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py index 5d17fed..5ddea76 100644 --- a/gn3/computations/qtlreaper.py +++ b/gn3/computations/qtlreaper.py @@ -4,6 +4,8 @@ computation of QTLs. """ import os import subprocess +from typing import Union + from gn3.random import random_string from gn3.settings import TMPDIR, REAPER_COMMAND @@ -70,9 +72,9 @@ def run_reaper( output_dir, random_string(10)) output_list = ["--main_output", output_filename] if separate_nperm_output: - permu_output_filename = "{}/qtlreaper/permu_output_{}.txt".format( + permu_output_filename: Union[None, str] = "{}/qtlreaper/permu_output_{}.txt".format( output_dir, random_string(10)) - output_list = output_list + ["--permu_output", permu_output_filename] + output_list = output_list + ["--permu_output", permu_output_filename] # type: ignore[list-item] else: permu_output_filename = None |