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Diffstat (limited to 'gn3/computations/qtlreaper.py')
| -rw-r--r-- | gn3/computations/qtlreaper.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py index 02d6572..5180853 100644 --- a/gn3/computations/qtlreaper.py +++ b/gn3/computations/qtlreaper.py @@ -110,12 +110,15 @@ def organise_reaper_main_results(parsed_results): unique_chromosomes = {item["Chr"] for item in id_items} return { "ID": identifier, - "chromosomes": [ + "chromosomes": {_chr["Chr"]: _chr for _chr in [ __organise_by_chromosome(chromo, id_items) - for chromo in sorted(unique_chromosomes)]} + for chromo in sorted( + unique_chromosomes, key=chromosome_sorter_key_fn)]}} unique_ids = {res["ID"] for res in parsed_results} - return [__organise_by_id(_id, parsed_results) for _id in sorted(unique_ids)] + return { + trait["ID"]: trait for trait in + [__organise_by_id(_id, parsed_results) for _id in sorted(unique_ids)]} def parse_reaper_main_results(results_file): """ |