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Diffstat (limited to 'gn3/computations/heatmap.py')
-rw-r--r-- | gn3/computations/heatmap.py | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/gn3/computations/heatmap.py b/gn3/computations/heatmap.py index 1c86261..5a3c619 100644 --- a/gn3/computations/heatmap.py +++ b/gn3/computations/heatmap.py @@ -203,3 +203,22 @@ def compute_heatmap_order( return __order_maker(__order_maker(norder, slnk_dt[0]), slnk_dt[1]) return __order_maker(neworder, slink_data) + +def retrieve_strains_and_values(strainlist, trait_data): + """ + Get the strains and their corresponding values from `strainlist` and + `trait_data`. + + This migrates the code in + https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/heatmap/Heatmap.py#L215-221 + """ + def __strains_and_values(acc, i): + if trait_data[i] is None: + return acc + if len(acc) == 0: + return ((strainlist[i], ), (trait_data[i], )) + _strains = acc[0] + _vals = acc[1] + return (_strains + (strainlist[i], ), _vals + (trait_data[i], )) + return reduce( + __strains_and_values, range(len(strainlist)), (tuple(), tuple())) |