diff options
Diffstat (limited to 'gn3/computations/gemma.py')
| -rw-r--r-- | gn3/computations/gemma.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 8036a7b..7f09b0a 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -5,6 +5,7 @@ from base64 import b64encode from hashlib import md5 from typing import Dict from typing import List +from typing import Optional from typing import ValuesView from gn3.commands import compose_gemma_cmd from gn3.fs_helpers import get_hash_of_files @@ -53,8 +54,8 @@ def generate_gemma_cmd(gemma_cmd: str, output_dir: str, token: str, gemma_kwargs: Dict, - gemma_wrapper_kwargs: Dict = None, - chromosomes: str = None) -> Dict: + gemma_wrapper_kwargs: Optional[Dict] = None, + chromosomes: Optional[str] = None) -> Dict: """Compute k values""" _hash = get_hash_of_files( [v for k, v in gemma_kwargs.items() if k in ["g", "p", "a", "c"]]) |