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-rw-r--r--gn3/computations/ctl.py20
1 files changed, 20 insertions, 0 deletions
diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py
new file mode 100644
index 0000000..c4955a0
--- /dev/null
+++ b/gn3/computations/ctl.py
@@ -0,0 +1,20 @@
+"""module contains code to process ctl analysis data"""
+from gn3.commands import run_cmd
+
+from gn3.computations.wgcna import dump_wgcna_data
+from gn3.computations.wgcna import compose_wgcna_cmd
+
+
+def call_ctl_script(data):
+ """function to call ctl script"""
+
+ temp_file_name = dump_wgcna_data(data)
+ cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name)
+
+ try:
+ cmd_results = run_cmd(cmd)
+ print(cmd_results)
+ except Exception as e:
+ raise e
+
+ return "hello"