diff options
Diffstat (limited to 'gn3/computations/ctl.py')
| -rw-r--r-- | gn3/computations/ctl.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py index f881410..af1c508 100644 --- a/gn3/computations/ctl.py +++ b/gn3/computations/ctl.py @@ -3,7 +3,7 @@ import json from gn3.commands import run_cmd from gn3.computations.wgcna import dump_wgcna_data -from gn3.computations.wgcna import compose_wgcna_cmd +from gn3.computations.wgcna import compose_rscript_cmd from gn3.computations.wgcna import process_image from gn3.settings import TMPDIR @@ -13,7 +13,7 @@ def call_ctl_script(data): """function to call ctl script""" data["imgDir"] = TMPDIR temp_file_name = dump_wgcna_data(data) - cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name) + cmd = compose_rscript_cmd("ctl_analysis.R", temp_file_name) cmd_results = run_cmd(cmd) with open(temp_file_name, "r", encoding="utf-8") as outputfile: |