diff options
Diffstat (limited to 'gn3/computations/correlations.py')
| -rw-r--r-- | gn3/computations/correlations.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index 37c70e9..09288c5 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -8,6 +8,7 @@ from typing import List from typing import Tuple from typing import Optional from typing import Callable +from typing import Generator import scipy.stats import pingouin as pg @@ -80,7 +81,7 @@ def compute_sample_r_correlation(trait_name, corr_method, trait_vals, zip(*list(normalize_values(trait_vals, target_samples_vals)))) num_overlap = len(normalized_traits_vals) except ValueError: - return + return None if num_overlap > 5: @@ -107,7 +108,7 @@ package :not packaged in guix def filter_shared_sample_keys(this_samplelist, - target_samplelist) -> Tuple[List, List]: + target_samplelist) -> Generator: """Given primary and target sample-list for two base and target trait select filter the values using the shared keys |