diff options
Diffstat (limited to 'gn3/computations/correlations.py')
| -rw-r--r-- | gn3/computations/correlations.py | 11 |
1 files changed, 5 insertions, 6 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index bb13ff1..c930df0 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -8,7 +8,7 @@ from typing import Optional from typing import Callable import scipy.stats -from gn3.computations.biweight import calculate_biweight_corr +import pingouin as pg def map_shared_keys_to_values(target_sample_keys: List, @@ -102,11 +102,10 @@ package :not packaged in guix """ - try: - results = calculate_biweight_corr(x_val, y_val) - return results - except Exception as error: - raise error + results = pg.corr(x_val, y_val, method="bicor") + corr_coeff = results["r"].values[0] + p_val = results["p-val"].values[0] + return (corr_coeff, p_val) def filter_shared_sample_keys(this_samplelist, |