diff options
Diffstat (limited to 'gn3/computations/correlations.py')
| -rw-r--r-- | gn3/computations/correlations.py | 15 |
1 files changed, 7 insertions, 8 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index dc2f8d3..7a6ff11 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -89,10 +89,9 @@ package :not packaged in guix def filter_shared_sample_keys(this_samplelist, target_samplelist) -> Tuple[List, List]: - """Given primary and target samplelist for two base and target trait select -filter the values using the shared keys - - """ + """Given primary and target samplelist\ + for two base and target trait select\ + filter the values using the shared keys""" this_vals = [] target_vals = [] for key, value in target_samplelist.items(): @@ -105,8 +104,9 @@ filter the values using the shared keys def compute_all_sample_correlation(this_trait, target_dataset, corr_method="pearson") -> List: - """Given a trait data samplelist and target__datasets compute all sample -correlation""" + """Given a trait data samplelist and\ + target__datasets compute all sample correlation + """ this_trait_samples = this_trait["trait_sample_data"] @@ -269,7 +269,7 @@ def query_formatter(query_string: str, *query_values): def map_to_mouse_gene_id(database, species: Optional[str], gene_id: Optional[str]) -> Optional[str]: - """given a species which is not mouse map the gene_id\ + """Given a species which is not mouse map the gene_id\ to respective mouse gene id""" # AK:xtodo move the code for checking nullity out of thing functions bug # while method for string @@ -296,7 +296,6 @@ def compute_all_lit_correlation(database_instance, trait_lists: List, species: str, gene_id): """Function that acts as an abstraction for lit_correlation_for_trait_list""" - # xtodo to be refactored lit_results = lit_correlation_for_trait_list( database=database_instance, |