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Diffstat (limited to 'gn3/base/webqtlCaseData.py')
| -rw-r--r-- | gn3/base/webqtlCaseData.py | 84 |
1 files changed, 0 insertions, 84 deletions
diff --git a/gn3/base/webqtlCaseData.py b/gn3/base/webqtlCaseData.py deleted file mode 100644 index 8395af8..0000000 --- a/gn3/base/webqtlCaseData.py +++ /dev/null @@ -1,84 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 - - -# uncomment below - -# from utility.logger import getLogger -# logger = getLogger(__name__) - -# import utility.tools - -# utility.tools.show_settings() -# pylint: disable-all - -class webqtlCaseData: - """one case data in one trait""" - - def __init__(self, name, value=None, variance=None, num_cases=None, name2=None): - self.name = name - self.name2 = name2 # Other name (for traits like BXD65a) - self.value = value # Trait Value - self.variance = variance # Trait Variance - self.num_cases = num_cases # Number of individuals/cases - self.extra_attributes = None - self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word) - self.outlier = None # Not set to True/False until later - - def __repr__(self): - case_data_string = "<webqtlCaseData> " - if self.value is not None: - case_data_string += "value=%2.3f" % self.value - if self.variance is not None: - case_data_string += " variance=%2.3f" % self.variance - if self.num_cases: - case_data_string += " ndata=%s" % self.num_cases - if self.name: - case_data_string += " name=%s" % self.name - if self.name2: - case_data_string += " name2=%s" % self.name2 - return case_data_string - - @property - def class_outlier(self): - """Template helper""" - if self.outlier: - return "outlier" - return "" - - @property - def display_value(self): - if self.value is not None: - return "%2.3f" % self.value - return "x" - - @property - def display_variance(self): - if self.variance is not None: - return "%2.3f" % self.variance - return "x" - - @property - def display_num_cases(self): - if self.num_cases is not None: - return "%s" % self.num_cases - return "x"
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