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-rw-r--r--gn3/auth/authorisation/resources/views.py24
1 files changed, 23 insertions, 1 deletions
diff --git a/gn3/auth/authorisation/resources/views.py b/gn3/auth/authorisation/resources/views.py
index ad39df7..44e2c4e 100644
--- a/gn3/auth/authorisation/resources/views.py
+++ b/gn3/auth/authorisation/resources/views.py
@@ -1,11 +1,18 @@
"""The views/routes for the resources package"""
import uuid
+from functools import partial
+
from flask import request, jsonify, Response, Blueprint, current_app as app
+from gn3 import db_utils as gn3dbutils
+from gn3.auth.db_utils import with_db_connection
+
+from .data import retrieve_ungrouped_data
from .models import (
resource_by_id, resource_categories, resource_category_by_id,
create_resource as _create_resource)
+from ..errors import AuthorisationError
from ..groups.models import user_group, DUMMY_GROUP
from ... import db
@@ -52,7 +59,10 @@ def view_resource(resource_id: uuid.UUID) -> Response:
@resources.route("/<string:resource_type>/unlinked-data")
@require_oauth("profile group resource")
def unlinked_data(resource_type: str) -> Response:
- """View unlinked data"""
+ """View data linked to the group but not linked to any resource."""
+ if resource_type not in ("all", "mrna", "genotype", "phenotype"):
+ raise AuthorisationError(f"Invalid resource type {resource_type}")
+
with require_oauth.acquire("profile group resource") as the_token:
db_uri = app.config["AUTH_DB"]
with db.connection(db_uri) as conn, db.cursor(conn) as cursor:
@@ -97,3 +107,15 @@ def unlinked_data(resource_type: str) -> Response:
return jsonify(tuple(dict(row) for row in cursor.fetchall()))
return jsonify(tuple())
+
+@resources.route("/<string:dataset_type>/ungrouped-data", methods=["GET"])
+@require_oauth("profile group resource")
+def ungrouped_data(dataset_type: str) -> Response:
+ """View data not linked to any group."""
+ if dataset_type not in ("all", "mrna", "genotype", "phenotype"):
+ raise AuthorisationError(f"Invalid dataset type {dataset_type}")
+
+ with gn3dbutils.database_connection() as gn3conn:
+ return jsonify(with_db_connection(partial(
+ retrieve_ungrouped_data, gn3conn=gn3conn,
+ dataset_type=dataset_type)))