diff options
Diffstat (limited to 'gn3/auth/authorisation/groups')
| -rw-r--r-- | gn3/auth/authorisation/groups/views.py | 21 |
1 files changed, 14 insertions, 7 deletions
diff --git a/gn3/auth/authorisation/groups/views.py b/gn3/auth/authorisation/groups/views.py index 202df95..9e717a9 100644 --- a/gn3/auth/authorisation/groups/views.py +++ b/gn3/auth/authorisation/groups/views.py @@ -180,12 +180,16 @@ def unlinked_phenotype_data( "ON lpd.data_link_id=pr.data_link_id " "WHERE lpd.group_id=? AND pr.data_link_id IS NULL", (str(group.group_id),)) - ids = tuple(( - row["SpeciesId"], row["InbredSetId"], row["PublishFreezeId"], - row["PublishXRefId"]) for row in authcur.fetchall()) - if len(ids) < 1: + results = authcur.fetchall() + ids: dict[tuple[str, ...], str] = { + ( + row["SpeciesId"], row["InbredSetId"], row["PublishFreezeId"], + row["PublishXRefId"]): row["data_link_id"] + for row in results + } + if len(ids.keys()) < 1: return tuple() - paramstr = ", ".join(["(%s, %s, %s, %s)"] * len(ids)) + paramstr = ", ".join(["(%s, %s, %s, %s)"] * len(ids.keys())) gn3cur.execute( "SELECT spc.SpeciesId, spc.SpeciesName, iset.InbredSetId, " "iset.InbredSetName, pf.Id AS PublishFreezeId, " @@ -208,7 +212,7 @@ def unlinked_phenotype_data( "ON pxr.PhenotypeId=phen.Id " "WHERE (spc.SpeciesId, iset.InbredSetId, pf.Id, pxr.Id) " f"IN ({paramstr})", - tuple(item for sublist in ids for item in sublist)) + tuple(item for sublist in ids.keys() for item in sublist)) return tuple({ **{key: value for key, value in row.items() if key not in ("Post_publication_description", "Pre_publication_description", @@ -216,7 +220,10 @@ def unlinked_phenotype_data( "description": ( row["Post_publication_description"] or row["Pre_publication_description"] or - row["Original_description"]) + row["Original_description"]), + "data_link_id": ids[tuple(str(row[key]) for key in ( + "SpeciesId", "InbredSetId", "PublishFreezeId", + "PublishXRefId"))] } for row in gn3cur.fetchall()) @groups.route("/<string:resource_type>/unlinked-data") |