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-rw-r--r--gn3/auth/authorisation/data/views.py33
1 files changed, 32 insertions, 1 deletions
diff --git a/gn3/auth/authorisation/data/views.py b/gn3/auth/authorisation/data/views.py
index b1550d7..70b14d7 100644
--- a/gn3/auth/authorisation/data/views.py
+++ b/gn3/auth/authorisation/data/views.py
@@ -5,7 +5,7 @@ import json
import random
import string
import datetime
-from functools import reduce
+from functools import reduce, partial
from typing import Sequence, Iterable
import redis
@@ -19,6 +19,7 @@ from gn3.db.traits import build_trait_name
from gn3.auth import db
from gn3.auth.dictify import dictify
+from gn3.auth.db_utils import with_db_connection
from gn3.auth.authorisation.errors import NotFoundError
@@ -39,6 +40,8 @@ from gn3.auth.authorisation.errors import ForbiddenAccess
from gn3.auth.authentication.oauth2.resource_server import require_oauth
from gn3.auth.authentication.users import User, user_by_email, set_user_password
+from gn3.auth.authorisation.data.genotypes import ungrouped_genotype_data
+
data = Blueprint("data", __name__)
@data.route("species")
@@ -305,3 +308,31 @@ def migrate_users_data() -> Response:
"The data migration service is currently unavailable.")
}),
status=500, mimetype="application/json")
+
+def __search_mrna__():
+ pass
+
+def __search_genotypes__():
+ query = request.form.get("query", request.args.get("query", ""))
+ limit = int(request.form.get("limit", request.args.get("limit", 10000)))
+ offset = int(request.form.get("offset", request.args.get("offset", 0)))
+ with gn3db.database_connection() as gn3conn:
+ __ungrouped__ = partial(
+ ungrouped_genotype_data, gn3conn=gn3conn, search_query=query,
+ limit=limit, offset=offset)
+ return jsonify(with_db_connection(__ungrouped__))
+
+def __search_phenotypes__():
+ pass
+
+@data.route("/search", methods=["GET"])
+@require_oauth("profile group resource")
+def search_unlinked_data():
+ """Search for various unlinked data."""
+ dataset_type = request.form["dataset_type"]
+ search_fns = {
+ "mrna": __search_mrna__,
+ "genotype": __search_genotypes__,
+ "phenotype": __search_phenotypes__
+ }
+ return search_fns[dataset_type]()