diff options
Diffstat (limited to 'gn3/api')
-rw-r--r-- | gn3/api/metadata.py | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 49c6798..a2eff05 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -10,6 +10,7 @@ from SPARQLWrapper import SPARQLWrapper from gn3.db.rdf import get_dataset_metadata from gn3.db.rdf import get_publication_metadata +from gn3.db.rdf import get_phenotype_metadata from gn3.db.rdf import sparql_query from gn3.db.rdf import RDF_PREFIXES @@ -51,6 +52,21 @@ def publication(name): return jsonify({}) +@metadata.route("/phenotype/<name>", methods=["GET"]) +def phenotype(name): + """Fetch a phenotype's metadata given it's name""" + try: + return jsonify( + get_phenotype_metadata( + SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")), + name, + ).data + ) + # The virtuoso server is misconfigured or it isn't running at all + except (RemoteDisconnected, URLError): + return jsonify({}) + + @metadata.route("/genewiki/<symbol>", methods=["GET"]) def get_genewiki_entries(symbol): """Fetch the GN and NCBI GeneRIF entries""" |