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-rw-r--r--gn3/api/wgcna.py25
1 files changed, 25 insertions, 0 deletions
diff --git a/gn3/api/wgcna.py b/gn3/api/wgcna.py
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+++ b/gn3/api/wgcna.py
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+"""endpoint to run wgcna analysis"""
+from flask import Blueprint
+from flask import request
+from flask import current_app
+from flask import jsonify
+
+from gn3.computations.wgcna import call_wgcna_script
+
+wgcna = Blueprint("wgcna", __name__)
+
+
+@wgcna.route("/run_wgcna", methods=["POST"])
+def run_wgcna():
+ """run wgcna:output should be a json with a the data"""
+
+ wgcna_data = request.json
+
+ wgcna_script = current_app.config["WGCNA_RSCRIPT"]
+
+ results = call_wgcna_script(wgcna_script, wgcna_data)
+
+ if results.get("data") is None:
+ return jsonify(results), 401
+
+ return jsonify(results), 200