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Diffstat (limited to 'gn3/api/rqtl.py')
| -rw-r--r-- | gn3/api/rqtl.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index 70ebe12..ae0110d 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -25,11 +25,11 @@ run the rqtl_wrapper script and return the results as JSON raise FileNotFoundError # Split kwargs by those with values and boolean ones that just convert to True/False - kwargs = ["covarstruct", "model", "method", "nperm", "scale", "control_marker"] + kwargs = ["covarstruct", "model", "method", "nperm", "scale", "control"] boolean_kwargs = ["addcovar", "interval", "pstrata", "pairscan"] all_kwargs = kwargs + boolean_kwargs - rqtl_kwargs = {"geno": genofile, "pheno": phenofile} + rqtl_kwargs = {"geno": genofile, "pheno": phenofile, "outdir": current_app.config.get("TMPDIR")} rqtl_bool_kwargs = [] for kwarg in all_kwargs: if kwarg in request.form: |