aboutsummaryrefslogtreecommitdiff
path: root/gn3/api/metadata.py
diff options
context:
space:
mode:
Diffstat (limited to 'gn3/api/metadata.py')
-rw-r--r--gn3/api/metadata.py16
1 files changed, 16 insertions, 0 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py
index a2eff05..f21739a 100644
--- a/gn3/api/metadata.py
+++ b/gn3/api/metadata.py
@@ -11,6 +11,7 @@ from SPARQLWrapper import SPARQLWrapper
from gn3.db.rdf import get_dataset_metadata
from gn3.db.rdf import get_publication_metadata
from gn3.db.rdf import get_phenotype_metadata
+from gn3.db.rdf import get_genotype_metadata
from gn3.db.rdf import sparql_query
from gn3.db.rdf import RDF_PREFIXES
@@ -67,6 +68,21 @@ def phenotype(name):
return jsonify({})
+@metadata.route("/genotype/<name>", methods=["GET"])
+def genotype(name):
+ """Fetch a genotype's metadata given it's name"""
+ try:
+ return jsonify(
+ get_genotype_metadata(
+ SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")),
+ name,
+ ).data
+ )
+ # The virtuoso server is misconfigured or it isn't running at all
+ except (RemoteDisconnected, URLError):
+ return jsonify({})
+
+
@metadata.route("/genewiki/<symbol>", methods=["GET"])
def get_genewiki_entries(symbol):
"""Fetch the GN and NCBI GeneRIF entries"""