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Diffstat (limited to 'gn3/api/datasets.py')
-rw-r--r-- | gn3/api/datasets.py | 64 |
1 files changed, 0 insertions, 64 deletions
diff --git a/gn3/api/datasets.py b/gn3/api/datasets.py deleted file mode 100644 index 2d13120..0000000 --- a/gn3/api/datasets.py +++ /dev/null @@ -1,64 +0,0 @@ -"""this module contains code for creating datasets""" -from flask import Blueprint -from flask import jsonify - -from gn3.computations.datasets import create_dataset -from gn3.computations.datasets import get_traits_data -from gn3.computations.datasets import get_probeset_trait_data - -from gn3.db_utils import database_connector - - -dataset = Blueprint("dataset", __name__) - - -@dataset.route("/create/<dataset_name>/") -@dataset.route("/create/<dataset_name>/<dataset_type>") -def create_dataset_api(dataset_name, dataset_type=None): - """Endpoint of creating dataset""" - - new_dataset = create_dataset( - dataset_type=dataset_type, dataset_name=dataset_name) - - results = { - "dataset": new_dataset - } - return jsonify(results) - - -@dataset.route("/fetch_traits_data/<dataset_name>/<dataset_type>") -def fetch_traits_data(dataset_name, dataset_type): - """Endpoint for fetching Trait data""" - # should fetch this(temp) - trait_sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, - 17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31, - 35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115, - 116, 117, 118, 119, 120, 919, 147, - 121, 40, 41, 124, 125, 128, 135, 129, 130, 131, - 132, 134, 138, 139, 140, 141, 142, 144, - 145, 148, 149, 920, 922, 2, 3, 1, 1100] - - conn, _cursor = database_connector() - results = get_traits_data(sample_ids=trait_sample_ids, database_instance=conn, - dataset_name=dataset_name, dataset_type=dataset_type) - conn.close() - - return jsonify({"results": results}) - - -@dataset.route("/fetch_probeset_data/<dataset_name>") -def fetch_probeset_data(dataset_name): - """Endpoint for fetching probeset trait data""" - trait_sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, - 17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31, - 35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115, - 116, 117, 118, 119, 120, 919, 147, - 121, 40, 41, 124, 125, 128, 135, 129, 130, 131, - 132, 134, 138, 139, 140, 141, 142, 144, - 145, 148, 149, 920, 922, 2, 3, 1, 1100] - - conn, _cursor = database_connector() - - results = get_probeset_trait_data(trait_sample_ids, conn, dataset_name) - - return jsonify({"results": results}) |