diff options
Diffstat (limited to 'gn3/api/datasets.py')
-rw-r--r-- | gn3/api/datasets.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gn3/api/datasets.py b/gn3/api/datasets.py new file mode 100644 index 0000000..7f08de5 --- /dev/null +++ b/gn3/api/datasets.py @@ -0,0 +1,44 @@ +"""this module contains code for creating datasets""" +from flask import Blueprint +from flask import jsonify + +from gn3.computations.datasets import create_dataset +from gn3.computations.datasets import get_traits_data +from gn3.experimental_db import database_connector + + +dataset = Blueprint("dataset", __name__) + + +@dataset.route("/create/<dataset_name>/") +@dataset.route("/create/<dataset_name>/<dataset_type>") +def create_dataset_api(dataset_name, dataset_type=None): + """Endpoint of creating dataset""" + + new_dataset = create_dataset( + dataset_type=dataset_type, dataset_name=dataset_name) + + results = { + "dataset": new_dataset + } + return jsonify(results) + + +@dataset.route("/fetch_traits_data/<dataset_name>/<dataset_type>") +def fetch_traits_data(dataset_name, dataset_type): + """Endpoint for fetching Trait data""" + # should fetch this(temp) + trait_sample_ids = [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, + 17, 18, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31, + 35, 36, 37, 39, 98, 99, 100, 103, 487, 105, 106, 110, 115, + 116, 117, 118, 119, 120, 919, 147, + 121, 40, 41, 124, 125, 128, 135, 129, 130, 131, + 132, 134, 138, 139, 140, 141, 142, 144, + 145, 148, 149, 920, 922, 2, 3, 1, 1100] + + conn, _cursor = database_connector() + results = get_traits_data(sample_ids=trait_sample_ids, database_instance=conn, + dataset_name=dataset_name, dataset_type=dataset_type) + conn.close() + + return jsonify({"results": results}) |