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+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "#### Running GEMMA from GN3\n",
+ "\n",
+ "This document outlines how to use gemma from Genenetwork3."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "If you are running gn3 through a development environment, ensure that it is up and running by running the command:\n",
+ "\n",
+ "```sh\n",
+ "env FLASK_APP=\"main.py\" flask run --port 8080\n",
+ "```\n",
+ "\n",
+ "To ensure that things are working, run:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "{'code': 0, 'output': 'gemma-wrapper 0.98.1 (Ruby 2.6.5) by Pjotr Prins 2017,2018\\n'}\n"
+ ]
+ }
+ ],
+ "source": [
+ "import requests\n",
+ "r = requests.get(\"http://127.0.0.1:8080/gemma/version\")\n",
+ "print(r.json())"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": []
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "/gnu/store/bvd09gb8ka642jzgxd2lpqlpdp160gn0-python-wrapper-3.8.2/bin/python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.8.2"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}