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Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 6 |
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@@ -95,6 +95,12 @@ and try again. Also make sure your ~/guix-bioinformatics is up to date. See also instructions in [.guix.scm](.guix.scm). +#### Setting necessary environment variables + +At least the following two need to be set for R/qtl to work (there might be others which I'll add if they come up): +RQTL_WRAPPER (should be in genenetwork3/scripts/rqtl_wrapper.R) +TMPDIR (where the rqtl_wrapper.R cross files are generated, used by the R script) + ## Migrations **NOTE**: Do not create migration scripts manually. Use the processes indicated below. |