diff options
| -rw-r--r-- | tests/fixtures/rdf.py | 2 | ||||
| -rw-r--r-- | tests/unit/db/rdf/test_wiki.py | 45 |
2 files changed, 36 insertions, 11 deletions
diff --git a/tests/fixtures/rdf.py b/tests/fixtures/rdf.py index 776a5d4..6d5b6aa 100644 --- a/tests/fixtures/rdf.py +++ b/tests/fixtures/rdf.py @@ -1,7 +1,7 @@ """Test fixtures to set up a test named graph for loading RDF data.""" +import os from requests.auth import HTTPDigestAuth from flask import config -import os import requests import pytest diff --git a/tests/unit/db/rdf/test_wiki.py b/tests/unit/db/rdf/test_wiki.py index 73ac2ef..5f36034 100644 --- a/tests/unit/db/rdf/test_wiki.py +++ b/tests/unit/db/rdf/test_wiki.py @@ -1,8 +1,26 @@ -"""Tests for gn3/db/rdf/wiki.py""" +"""Tests for gn3/db/rdf/wiki.py + +NOTE: + +Some errors like W0611, W0613, and W0621 are due to Pytest's usage of +fixtures. This errors are Ignored for now. The alternative would be +to install pylint-pytest: + + https://github.com/pylint-dev/pylint-pytest + +More discussions: + + https://github.com/PyCQA/meta/issues/56 + +""" from unittest import TestCase -from tests.fixtures.rdf import rdf_setup, get_sparql_auth_conf import pytest -import os + +# pylint: disable=W0611 +from tests.fixtures.rdf import ( + rdf_setup, + get_sparql_auth_conf +) from gn3.db.rdf.wiki import ( __sanitize_result, @@ -169,7 +187,7 @@ def test_sanitize_result(result, expected): @pytest.mark.rdf -def test_get_wiki_entries_by_symbol(rdf_setup): +def test_get_wiki_entries_by_symbol(rdf_setup): # pylint: disable=W0613,W0621 """Test that wiki entries are fetched correctly by symbol""" result = get_wiki_entries_by_symbol( symbol="ckb", @@ -222,7 +240,10 @@ def test_get_wiki_entries_by_symbol(rdf_setup): "Genetic variation and alleles", "Interactions: mRNA, proteins, other molecules", ], - "comment": "Strong cis eQTL in brain RNA-seq data (LRS of 29 high B allele). Highly expressed in almost all neurons (not just interneurons). Trans targets of CKB include striatin (STRN) and C1QL3 (CTRP13).", + "comment": "Strong cis eQTL in brain RNA-seq data \ +(LRS of 29 high B allele). Highly expressed in almost all neurons \ +(not just interneurons). Trans targets of CKB include striatin (STRN) \ +and C1QL3 (CTRP13).", "created": "2012-11-11 10:37:11", "email": "XXX@XXX.com", "id": 5006, @@ -240,7 +261,8 @@ def test_get_wiki_entries_by_symbol(rdf_setup): @pytest.mark.rdf -def test_get_comment_history(rdf_setup): +def test_get_comment_history(rdf_setup): # pylint: disable=W0613,W0621 + """Test fetching a comment's history from RDF""" result = get_comment_history( comment_id=1158, sparql_uri=SPARQL_CONF["sparql_endpoint"], @@ -277,7 +299,8 @@ def test_get_comment_history(rdf_setup): "Probes and probe sets", "Transcriptional and translation control", ], - "comment": "Validated strong cis-QTL in CNS using allele-specific expression (ASE) SNaPshot assay. Possible 3' UTR variants.", + "comment": "Validated strong cis-QTL in CNS using allele-specific \ +expression (ASE) SNaPshot assay. Possible 3' UTR variants.", "created": "2007-04-05 09:11:05", "email": "XXX@XXX.com", "initial": "dcc", @@ -311,7 +334,9 @@ def test_get_comment_history(rdf_setup): "Probes and probe sets", "Transcriptional and translation control", ], - "comment": "Validated strong cis-QTL in CNS using allele-specific expression (ASE) SNaPshot assay (Daniel Ciobanu and al., 2007). Possible 3' UTR variants.", + "comment": "Validated strong cis-QTL in CNS using allele-specific \ +expression (ASE) SNaPshot assay (Daniel Ciobanu and al., 2007). \ +Possible 3' UTR variants.", "created": "2007-05-08 14:46:07", "email": "XXX@XXX.com", "initial": "dcc", @@ -328,9 +353,9 @@ def test_get_comment_history(rdf_setup): @pytest.mark.rdf -def test_update_wiki_comment(rdf_setup): +def test_update_wiki_comment(rdf_setup): # pylint: disable=W0613,W0621 """Test that a comment is updated correctly""" - response = update_wiki_comment( + update_wiki_comment( insert_dict={ "Id": 230, "symbol": "Shh", |