diff options
| -rw-r--r-- | gn3/db/rdf/wiki.py | 44 |
1 files changed, 24 insertions, 20 deletions
diff --git a/gn3/db/rdf/wiki.py b/gn3/db/rdf/wiki.py index 2a5924e..b1717ec 100644 --- a/gn3/db/rdf/wiki.py +++ b/gn3/db/rdf/wiki.py @@ -187,27 +187,32 @@ CONSTRUCT { def update_wiki_comment( - insert_dict: dict, - sparql_user: str, - sparql_password: str, - sparql_auth_uri: str, - graph: str = "<http://genenetwork.org>", + insert_dict: dict, + sparql_user: str, + sparql_password: str, + sparql_auth_uri: str, + graph: str = "<http://genenetwork.org>", ) -> str: """Update a wiki comment by inserting a comment with the same -identifier but an updated version id. + identifier but an updated version id. """ name = f"gn:wiki-{insert_dict['Id']}-{insert_dict['versionId']}" - comment_triple = Template("""$name rdfs:label '''$comment'''@en ; + comment_triple = Template( + """$name rdfs:label '''$comment'''@en ; rdf:type gnc:GNWikiEntry ; gnt:symbol "$symbol" ; dct:identifier "$comment_id"^^xsd:integer ; dct:hasVersion "$next_version"^^xsd:integer ; dct:created "$created"^^xsd:datetime . -""").substitute( +""" + ).substitute( comment=insert_dict["comment"], - name=name, symbol=insert_dict['symbol'], - comment_id=insert_dict["Id"], next_version=insert_dict["versionId"], - created=insert_dict["createtime"]) + name=name, + symbol=insert_dict["symbol"], + comment_id=insert_dict["Id"], + next_version=insert_dict["versionId"], + created=insert_dict["createtime"], + ) using = "" if insert_dict["email"]: comment_triple += f"{name} foaf:mbox <{insert_dict['email']}> .\n" @@ -216,9 +221,8 @@ dct:created "$created"^^xsd:datetime . if insert_dict["species"]: comment_triple += f"{name} gnt:belongsToSpecies ?speciesId .\n" using = Template( - """ USING $graph WHERE { ?speciesId gnt:shortName "$species" . } """).substitute( - graph=graph, species=insert_dict["species"] - ) + """ USING $graph WHERE { ?speciesId gnt:shortName "$species" . } """ + ).substitute(graph=graph, species=insert_dict["species"]) if insert_dict["reason"]: comment_triple += f"{name} gnt:reason \"{insert_dict['reason']}\" .\n" if insert_dict["weburl"]: @@ -237,10 +241,10 @@ INSERT { GRAPH $graph { $comment_triple} } $using -""").substitute(prefix=RDF_PREFIXES, - graph=graph, - comment_triple=comment_triple, - using=using), +""" + ).substitute( + prefix=RDF_PREFIXES, graph=graph, comment_triple=comment_triple, using=using + ), sparql_user=sparql_user, sparql_password=sparql_password, sparql_auth_uri=sparql_auth_uri, @@ -289,7 +293,7 @@ FROM $graph WHERE { } ORDER BY ?species ?createTime """ ).substitute(prefix=RDF_PREFIXES, graph=graph, symbol=symbol) - results: dict[str, dict|list] = { + results: dict[str, dict | list] = { "@context": { "dct": "http://purl.org/dc/terms/", "gnt": "http://genenetwork.org/term/", @@ -305,7 +309,7 @@ FROM $graph WHERE { "version": "dct:hasVersion", } } - data: list[dict[str, int|str]] = [] + data: list[dict[str, int | str]] = [] for entry in sparql_query(query=query, endpoint=sparql_uri, format_type="json"): data.append( { |