diff options
| -rwxr-xr-x | gn3-guile/web/webserver.scm | 19 |
1 files changed, 15 insertions, 4 deletions
diff --git a/gn3-guile/web/webserver.scm b/gn3-guile/web/webserver.scm index a1db6ad..30f8e64 100755 --- a/gn3-guile/web/webserver.scm +++ b/gn3-guile/web/webserver.scm @@ -176,18 +176,28 @@ SELECT DISTINCT ?taxon ?ncbi ?descr where { "))) +#! +gn:Mus_musculus rdf:type gnc:species . +gn:Mus_musculus gnt:name "Mouse" . +gn:Mus_musculus rdfs:label "Mouse (Mus musculus, mm10)" . +gn:Mus_musculus gnt:binomialName "Mus musculus" . +gn:Mus_musculus gnt:family "Vertebrates" . +gn:Mus_musculus gnt:organism taxon:10090 . +!# + (define (sparql-species) (sparql-scm (gn-sparql-endpoint-url) " PREFIX gn: <http://genenetwork.org/> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> SELECT DISTINCT ?species WHERE { - ?species rdf:type gn:species . + ?species rdf:type gnc:species . }")) (define (sparql-species-meta) (sparql-scm (gn-sparql-endpoint-url) " PREFIX gn: <http://genenetwork.org/id/> +PREFIX gnc: <http://genenetwork.org/category/> PREFIX gnterm: <http://genenetwork.org/term/> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> @@ -195,7 +205,7 @@ SELECT ?species ?p ?o WHERE { MINUS { ?species rdf:type ?o . } { SELECT DISTINCT ?species ?p ?o WHERE { - ?species rdf:type gn:species . + ?species rdf:type gnc:species . ?species ?p ?o . }}}")) @@ -286,11 +296,12 @@ SELECT ?species ?p ?o WHERE { (cons `("taxonomy-id" . ,ncbi-id) (cons `("ncbi-url" . ,(string-append "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=" ncbi-id)) (cons `("uniprot-url" . ,(string-append "https://www.uniprot.org/taxonomy/" ncbi-id)) - (cons `("wikidata-url" . ,(string-append "http://www.wikidata.org/entity/" wd-id)) + (cons `("wikidata-url" . ,(string-append "http://www.wikidata.org/entity/" wd-id)) + (cons `("wikispecies-url" . ,(string-append "https://species.wikimedia.org/wiki/" (strip-lang taxonomy-name)) (cons `("taxonomy-name" . ,(strip-lang taxonomy-name)) ; (cons `("shortname" . ,shortname) - problematic (cons `("description" . ,(strip-lang descr)) - rec)))))))))) + rec))))))))))) ) ))) ) (get-species) |