diff options
| -rw-r--r-- | gn3/computations/rqtl2.py | 10 |
1 files changed, 3 insertions, 7 deletions
diff --git a/gn3/computations/rqtl2.py b/gn3/computations/rqtl2.py index ae1e475..ec0636b 100644 --- a/gn3/computations/rqtl2.py +++ b/gn3/computations/rqtl2.py @@ -133,16 +133,12 @@ def process_permutation(data): """ perm_file = data.get("permutation_file") - perm_results = {} with open(perm_file, "r", encoding="utf-8") as file_handler: reader = csv.reader(file_handler) phenotypes = next(reader)[1:] - for line in reader: - permutation_id, *permutation_values = line - perm_results[permutation_id] = permutation_values - - _, significance = fetch_significance_results(data.get("significance_file")) - return { + perm_results = {_id:float(val) for (_id,val) in reader} + _, significance = fetch_significance_results(data.get("significance_file")) + return { "phenotypes": phenotypes, "perm_results": perm_results, "significance": significance, |