diff options
| -rw-r--r-- | gn3/llms/process.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/gn3/llms/process.py b/gn3/llms/process.py index e33d3bc..b29d4c9 100644 --- a/gn3/llms/process.py +++ b/gn3/llms/process.py @@ -7,11 +7,11 @@ import json from urllib.parse import urljoin from urllib.parse import quote +import logging import requests from gn3.llms.client import GeneNetworkQAClient from gn3.llms.response import DocIDs -from gn3.settings import TMPDIR BASE_URL = 'https://genenetwork.fahamuai.com/api/tasks' @@ -82,13 +82,15 @@ def fetch_pubmed(references, file_name, tmp_dir=""): """method to fetch and populate references with pubmed""" try: - pubmed = load_file(file_name) + pubmed = load_file(file_name, tmp_dir) for reference in references: if pubmed.get(reference["doc_id"]): reference["pubmed"] = pubmed.get(reference["doc_id"]) return references except FileNotFoundError: + logging.debug("failed to find pubmed_path for %s/%s", + tmp_dir, file_name) return references |