diff options
| -rw-r--r-- | gn3/computations/rqtl2.py | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/gn3/computations/rqtl2.py b/gn3/computations/rqtl2.py index 9377fd5..0380166 100644 --- a/gn3/computations/rqtl2.py +++ b/gn3/computations/rqtl2.py @@ -92,4 +92,15 @@ def prepare_files(tmpdir): return workspace_dir, input_file, output_file, log_file +def write_input_file(input_file, workspace_dir, data): + """ + Write input data to a json file to be passed + as input to the rqtl2 script + """ + with open(input_file,"w+", encoding="UTF-8") as file_handler: + # todo choose a better variable name + rqtl2_files = generate_rqtl2_files(data, workspace_dir) + json.dump(rqtl2_files, file_handler) + + |