diff options
| -rw-r--r-- | gn3/api/metadata.py | 26 |
1 files changed, 22 insertions, 4 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 7657fe3..dcb06f4 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -491,7 +491,8 @@ CONSTRUCT { @metadata.route("/genotypes/<name>", methods=["GET"]) -def genotypes(name): +@metadata.route("/genotypes/<dataset>/<name>", methods=["GET"]) +def genotypes(name, dataset=""): """Fetch a genotype's metadata given it's name""" try: _query = Template(""" @@ -499,7 +500,11 @@ $prefix CONSTRUCT { ?genotype ?predicate ?object . + ?genotype dcat:dataset ?dataset . ?species gnt:shortName ?speciesShortName . + ?dataset rdfs:label ?datasetName ; + skos:prefLabel ?datasetFullName ; + gnt:belongsToGroup ?groupName . } WHERE { ?genotype rdf:type gnc:Genotype ; rdfs:label "$name" ; @@ -508,8 +513,17 @@ CONSTRUCT { ?species ^gnt:belongsToSpecies ?genotype ; gnt:shortName ?speciesShortName . } . + OPTIONAL { + ?dataset rdf:type dcat:Dataset ; + (rdfs:label|dct:identifier|skos:prefLabel) "$dataset" ; + rdfs:label ?datasetName ; + skos:prefLabel ?datasetFullName ; + gnt:belongsToGroup ?inbredSet . + ?inbredSet rdfs:label ?groupName . + } . } -""").substitute(prefix=RDF_PREFIXES, name=name) +""").substitute(prefix=RDF_PREFIXES, + name=name, dataset=dataset) _context = { "@context": BASE_CONTEXT | { "rdfs": "http://www.w3.org/2000/01/rdf-schema#", @@ -519,6 +533,10 @@ CONSTRUCT { "xsd": "http://www.w3.org/2001/XMLSchema#", "name": "rdfs:label", "chr": "gnt:chr", + "skos": "http://www.w3.org/2004/02/skos/core#", + "prefLabel": "skos:prefLabel", + "dcat": "http://www.w3.org/ns/dcat#", + "dataset": "dcat:dataset", "mb": "gnt:mb", "mbMm8": "gnt:mbMm8", "mb2016": "gnt:mb2016", @@ -528,6 +546,7 @@ CONSTRUCT { "speciesName": "gnt:shortName", "alternateSource": "gnt:hasAltSourceName", "comments": "rdfs:comments", + "group": "gnt:belongsToGroup", "chrNum": { "@id": "gnt:chrNum", "@type": "xsd:int", @@ -959,8 +978,7 @@ CONSTRUCT { ?species gnt:shortName ?speciesShortName . } . } -""").substitute(prefix=RDF_PREFIXES, - name=name, dataset=dataset) +""").substitute(prefix=RDF_PREFIXES, name=name, dataset=dataset) _context = { "@context": BASE_CONTEXT | { "alias": "skos:altLabel", |