diff options
| -rw-r--r-- | .guix/genenetwork3-package.scm | 59 |
1 files changed, 36 insertions, 23 deletions
diff --git a/.guix/genenetwork3-package.scm b/.guix/genenetwork3-package.scm index 16095d5..ab0f5b8 100644 --- a/.guix/genenetwork3-package.scm +++ b/.guix/genenetwork3-package.scm @@ -3,6 +3,8 @@ #:select (genenetwork3) #:prefix gn:) #:use-module ((gnu packages check) #:select (python-pylint)) #:use-module ((gnu packages python-check) #:select (python-mypy)) + #:use-module ((gnu packages linux) #:select (procps)) + #:use-module ((gnu packages databases) #:select (virtuoso-ose)) #:use-module (guix gexp) #:use-module (guix utils) #:use-module (guix git-download) @@ -10,31 +12,42 @@ (define-public genenetwork3 (package - (inherit gn:genenetwork3) - (version (string-append (package-version gn:genenetwork3) "-git")) - (source (local-file ".." - "genenetwork3-checkout" - #:recursive? #t - #:select? (or (git-predicate (dirname (current-source-directory))) - (const #t)))))) + (inherit gn:genenetwork3) + (version (string-append (package-version gn:genenetwork3) "-git")) + (source (local-file ".." + "genenetwork3-checkout" + #:recursive? #t + #:select? (or (git-predicate (dirname (current-source-directory))) + (const #t)))))) (define-public genenetwork3-all-tests (package - (inherit genenetwork3) - (arguments - (substitute-keyword-arguments (package-arguments genenetwork3) - ((#:phases phases #~%standard-phases) - #~(modify-phases #$phases - (add-before 'build 'pylint - (lambda _ - (invoke "pylint" "main.py" "setup.py" "wsgi.py" "setup_commands" - "tests" "gn3" "scripts" "sheepdog"))) - (add-after 'pylint 'mypy - (lambda _ - (invoke "mypy" "."))))))) - (native-inputs - (modify-inputs (package-native-inputs genenetwork3) - (prepend python-pylint) - (prepend python-mypy))))) + (inherit genenetwork3) + (arguments + (substitute-keyword-arguments (package-arguments genenetwork3) + ((#:phases phases #~%standard-phases) + #~(modify-phases #$phases + (add-after + 'unpack 'patch-sources + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((virtuoso-ose (assoc-ref inputs "virtuoso-ose"))) + (substitute* "tests/fixtures/rdf.py" + (("virtuoso-t") + (string-append #$virtuoso-ose "/bin/virtuoso-t")))))) + (add-after 'build 'rdf-tests + (lambda _ + (invoke "pytest" "-k" "rdf"))) + (add-before 'build 'pylint + (lambda _ + (invoke "pylint" "main.py" "setup.py" "wsgi.py" "setup_commands" + "tests" "gn3" "scripts" "sheepdog"))) + (add-after 'pylint 'mypy + (lambda _ + (invoke "mypy" "."))))))) + (native-inputs + (modify-inputs (package-native-inputs genenetwork3) + (prepend procps) + (prepend python-pylint) + (prepend python-mypy))))) genenetwork3 |