diff options
| -rw-r--r-- | gn3/api/rqtl2.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/gn3/api/rqtl2.py b/gn3/api/rqtl2.py index 6753f39..fb6363e 100644 --- a/gn3/api/rqtl2.py +++ b/gn3/api/rqtl2.py @@ -9,6 +9,7 @@ from gn3.computations.rqtl2 import compose_rqtl2_cmd from gn3.computations.rqtl2 import prepare_files from gn3.computations.rqtl2 import validate_required_keys from gn3.computations.rqtl2 import write_input_file +from gn3.computations.rqtl2 import process_qtl2_results from gn3.computations.streaming import run_process rqtl2 = Blueprint("rqtl2", __name__) @@ -39,7 +40,8 @@ def compute(): output_file, workspace_dir, data, current_app.config) process_output = run_process(rqtl2_cmd.split(),log_file, run_id) - shutil.rmtree(workspace_dir, ignore_errors=True, onerror=None) - if process_output["code"]!=0: + if process_output["code"] != 0: return jsonify(process_output), 400 - return jsonify(process_output) + results = process_qtl2_results(output_file) + shutil.rmtree(workspace_dir, ignore_errors=True, onerror=None) + return jsonify(results) |