diff options
| -rw-r--r-- | gn3/computations/partial_correlations.py | 25 |
1 files changed, 18 insertions, 7 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index dbcbe29..1e4a646 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -717,19 +717,30 @@ def partial_correlations_entry(# pylint: disable=[R0913, R0914, R0911] def __make_sorter__(method): - def __sort_6__(row): - return row[6] - - def __sort_3__(row): + def __compare_lit_or_tiss_correlation_values_(row): + # Index Content + # 0 trait name + # 1 N + # 2 partial correlation coefficient + # 3 p value of partial correlation + # 6 literature/tissue correlation value + return (row[6], row[3]) + + def __compare_partial_correlation_p_values__(row): + # Index Content + # 0 trait name + # 1 partial correlation coefficient + # 2 N + # 3 p value of partial correlation return row[3] if "literature" in method.lower(): - return __sort_6__ + return __compare_lit_or_tiss_correlation_values_ if "tissue" in method.lower(): - return __sort_6__ + return __compare_lit_or_tiss_correlation_values_ - return __sort_3__ + return __compare_partial_correlation_p_values__ sorted_correlations = sorted( all_correlations, key=__make_sorter__(method)) |