diff options
| -rw-r--r-- | scripts/rqtl_wrapper.R | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/rqtl_wrapper.R b/scripts/rqtl_wrapper.R index f7e0406..f6788c5 100644 --- a/scripts/rqtl_wrapper.R +++ b/scripts/rqtl_wrapper.R @@ -195,18 +195,18 @@ if (opt$nperm > 0) { if (!is.null(opt$addcovar) || !is.null(opt$control)){ if (!is.null(opt$pstrata)) { - verbose_print('Running permutations with cofactors and strata\n') + verbose_print('Running ', opt$nperm, ' permutations with cofactors and strata\n') perm_results = scanone(cross_object, pheno.col=1, addcovar=covars, n.perm=opt$nperm, perm.strata=perm_strata, model=opt$model, method=opt$method) } else { - verbose_print('Running permutations with cofactors\n') + verbose_print('Running ', opt$nperm, ' permutations with cofactors\n') perm_results = scanone(cross_object, pheno.col=1, addcovar=covars, n.perm=opt$nperm, model=opt$model, method=opt$method) } } else { if (!is.null(opt$pstrata)) { - verbose_print('Running permutations with strata\n') + verbose_print('Running ', opt$nperm, ' permutations with strata\n') perm_results = scanone(cross_object, pheno.col=1, n.perm=opt$nperm, perm.strata=perm_strata, model=opt$model, method=opt$method) } else { - verbose_print('Running permutations\n') + verbose_print('Running ', opt$nperm, ' permutations\n') perm_results = scanone(cross_object, pheno.col=1, n.perm=opt$nperm, model=opt$model, method=opt$method) } } |