diff options
| -rw-r--r-- | gn3/computations/wgcna.py | 19 |
1 files changed, 11 insertions, 8 deletions
diff --git a/gn3/computations/wgcna.py b/gn3/computations/wgcna.py index 76c71d5..0e49527 100644 --- a/gn3/computations/wgcna.py +++ b/gn3/computations/wgcna.py @@ -33,17 +33,20 @@ def stream_cmd_output(socketio, request_data, cmd: str): namespace="/", room=request_data["socket_id"]) results = subprocess.Popen( cmd, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, shell=True) - for line in iter(results.stdout.readline, b""): - line = line.decode("utf-8").rstrip() + if results.stdout is not None: - socketio.emit("output", - {"data": line}, namespace="/", room=request_data["socket_id"]) + for line in iter(results.stdout.readline, b""): - socketio.emit( - "output", {"data": - "parsing the output results"}, namespace="/", - room=request_data["socket_id"]) + line = line.decode("utf-8").rstrip() + + socketio.emit("output", + {"data": line}, namespace="/", room=request_data["socket_id"]) + + socketio.emit( + "output", {"data": + "parsing the output results"}, namespace="/", + room=request_data["socket_id"]) def process_image(image_loc: str) -> bytes: |