diff options
| -rw-r--r-- | gn3/api/heatmaps.py | 4 | ||||
| -rw-r--r-- | gn3/app.py | 7 | ||||
| -rw-r--r-- | gn3/settings.py | 12 | ||||
| -rw-r--r-- | guix.scm | 3 |
4 files changed, 23 insertions, 3 deletions
diff --git a/gn3/api/heatmaps.py b/gn3/api/heatmaps.py index eea3ebe..43ac580 100644 --- a/gn3/api/heatmaps.py +++ b/gn3/api/heatmaps.py @@ -15,9 +15,9 @@ def clustered_heatmaps(): "message": "You need to provide at least one trait name." }), 400 conn, _cursor = database_connector() - def setup_trait_fullname(trait): + def parse_trait_fullname(trait): name_parts = trait.split(":") return "{dataset_name}::{trait_name}".format( - dataset_name=trait[1], trait_name=trait[0]) + dataset_name=name_parts[1], trait_name=name_parts[0]) traits_fullnames = [parse_trait_fullname(trait) for trait in traits_names] return jsonify(build_heatmap(traits_fullnames, conn)), 200 @@ -11,6 +11,7 @@ from gn3.api.heatmaps import heatmaps from gn3.api.correlation import correlation from gn3.api.data_entry import data_entry +from flask_cors import CORS def create_app(config: Union[Dict, str, None] = None) -> Flask: """Create a new flask object""" @@ -18,6 +19,12 @@ def create_app(config: Union[Dict, str, None] = None) -> Flask: # Load default configuration app.config.from_object("gn3.settings") + CORS( + app, + origins=app.config["CORS_ORIGINS"], + allow_headers=app.config["CORS_HEADERS"], + supports_credentials=True, intercept_exceptions=False) + # Load environment configuration if "GN3_CONF" in os.environ: app.config.from_envvar('GN3_CONF') diff --git a/gn3/settings.py b/gn3/settings.py index a08f846..9d7bba3 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -31,3 +31,15 @@ REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT")) # genotype files GENOTYPE_FILES = os.environ.get( "GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME"))) + +# CROSS-ORIGIN SETUP +CORS_ORIGINS = [ + "http://localhost:*", + "http://127.0.0.1:*" +] + +CORS_HEADERS = [ + "Content-Type", + "Authorization", + "Access-Control-Allow-Credentials" +] @@ -106,7 +106,8 @@ ("r-stringi" ,r-stringi) ("python-plotly" ,python-plotly) ("python-pandas" ,python-pandas) - ("rust-qtlreaper" ,rust-qtlreaper))) + ("rust-qtlreaper" ,rust-qtlreaper) + ("python-flask-cors" ,python-flask-cors))) (build-system python-build-system) (home-page "https://github.com/genenetwork/genenetwork3") (synopsis "GeneNetwork3 API for data science and machine learning.") |