diff options
| -rw-r--r-- | gn3/heatmaps.py | 14 |
1 files changed, 12 insertions, 2 deletions
diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py index 4349ee0..c48a2d3 100644 --- a/gn3/heatmaps.py +++ b/gn3/heatmaps.py @@ -5,15 +5,25 @@ generate various kinds of heatmaps. from functools import reduce from gn3.settings import TMPDIR +import plotly.graph_objects as go +from gn3.random import random_string from typing import Any, Dict, Sequence from gn3.computations.slink import slink -from gn3.computations.qtlreaper import generate_traits_file +from plotly.subplots import make_subplots from gn3.computations.correlations2 import compute_correlation -from gn3.db.genotypes import build_genotype_file, load_genotype_samples +from gn3.db.genotypes import ( + build_genotype_file, load_genotype_samples, parse_genotype_file) from gn3.db.traits import ( retrieve_trait_data, retrieve_trait_info, generate_traits_filename) +from gn3.computations.qtlreaper import ( + run_reaper, + generate_traits_file, + chromosome_sorter_key_fn, + parse_reaper_main_results, + organise_reaper_main_results, + parse_reaper_permutation_results) def export_trait_data( trait_data: dict, strainlist: Sequence[str], dtype: str = "val", |