diff options
| -rw-r--r-- | gn3/db/datasets.py | 7 |
1 files changed, 3 insertions, 4 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py index 9186875..48cd195 100644 --- a/gn3/db/datasets.py +++ b/gn3/db/datasets.py @@ -1,11 +1,10 @@ """ This module contains functions relating to specific trait dataset manipulation """ +import os from typing import Any - -def retrieve_sample_list( - group: str, connection: Any): +def retrieve_sample_list(group: str): """ Get the sample list for a group (a category that datasets belong to) @@ -13,7 +12,7 @@ def retrieve_sample_list( the "official" sample list is stored """ - genofile_path = current_app.config.get("RQTL_WRAPPER_CMD") + "/" + group + ".geno" + genofile_path = os.environ.get("GENENETWORK_FILES") + "/genotype/" + group + ".geno" if os.path.isfile(genofile_path): genofile = open(genofile_path) |