diff options
| -rw-r--r-- | gn3/computations/ctl.py | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py index c4955a0..8f20b65 100644 --- a/gn3/computations/ctl.py +++ b/gn3/computations/ctl.py @@ -1,4 +1,5 @@ """module contains code to process ctl analysis data""" +import json from gn3.commands import run_cmd from gn3.computations.wgcna import dump_wgcna_data @@ -14,7 +15,11 @@ def call_ctl_script(data): try: cmd_results = run_cmd(cmd) print(cmd_results) - except Exception as e: - raise e + with open(temp_file_name,"r") as outputfile: + if cmd_results["code"] != 0: + return cmd_results + return json.load(outputfile) + - return "hello" + except Exception as e: + return str(e) |