diff options
| -rw-r--r-- | gn3/commands.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/commands.py b/gn3/commands.py index 255ea1d..14bd295 100644 --- a/gn3/commands.py +++ b/gn3/commands.py @@ -35,10 +35,10 @@ def compose_rqtl_cmd(rqtl_wrapper_cmd: str, rqtl_wrapper_bool_kwargs: list) -> str: """Compose a valid R/qtl command given the correct input""" # Add kwargs with values - cmd = rqtl_wrapper_cmd + " " + " ".join( + cmd = f"Rscript { rqtl_wrapper_cmd } " + " ".join( [f"--{key} {val}" for key, val in rqtl_wrapper_kwargs.items()]) - # Add boolean kwargs (kwargs without values) + # Add boolean kwargs (kwargs that are either on or off, like --interval) if rqtl_wrapper_bool_kwargs: cmd += " " cmd += " ".join([f"--{val}" for val in rqtl_wrapper_bool_kwargs]) |