diff options
| -rwxr-xr-x | sql/map-database.sh | 15 | ||||
| -rw-r--r-- | sql/schema-original.sql | 2334 | ||||
| -rw-r--r-- | sql/schema.png | bin | 0 -> 1412091 bytes | |||
| -rw-r--r-- | sql/schema.sql | 2406 | ||||
| -rw-r--r-- | sql/schema.svg | 1430 | ||||
| -rw-r--r-- | sql/update/README.md (renamed from sql/README.md) | 0 | ||||
| -rw-r--r-- | sql/update/metadata_audit.sql (renamed from sql/metadata_audit.sql) | 0 |
7 files changed, 6185 insertions, 0 deletions
diff --git a/sql/map-database.sh b/sql/map-database.sh new file mode 100755 index 0000000..2e4d1d7 --- /dev/null +++ b/sql/map-database.sh @@ -0,0 +1,15 @@ +#! /bin/sh -e + +# This scripts visualizes schema.sql into schema.png and schema.svg. It uses +# sqlt-graph from the perl-sql-transform package. Sadly, perl-sql-transform is +# not packaged for Guix yet. We will likely deprecate this script in favor of +# a custom scheme script that does not depend on perl-sql-transform. + +skip_tables=AvgMethod,CeleraINFO_mm6,Chr_Length,DatasetMapInvestigator,DatasetStatus,Dataset_mbat,EnsemblProbe,EnsemblProbeLocation,GORef,GeneCategory,GeneIDXRef,GeneList_rn3,GeneList_rn33,GeneMap_cuiyan,GeneRIFXRef,GenoCode,GenoFile,GenoSE,H2,InfoFiles,InfoFilesUser_md5,LCorrRamin3,RatSnpPattern,Sample,SampleXRef,SnpAllRat,SnpAllele_to_be_deleted,SnpPattern,SnpSource,Vlookup,metadata_audit,pubmedsearch,temporary + +clusters="Others=AccessLog,Docs,Investigators,MachineAccessLog,News,Organizations,TableComments,TableFieldAnnotation,User,UserPrivilege,login,role,roles_users,user,user_collection,user_openids" + +flags="--db MySQL --skip-tables $skip_tables --cluster $clusters" + +sqlt-graph $flags --output-type png --output schema.png schema.sql +sqlt-graph $flags --output-type svg --output schema.svg schema.sql diff --git a/sql/schema-original.sql b/sql/schema-original.sql new file mode 100644 index 0000000..8803d8a --- /dev/null +++ b/sql/schema-original.sql @@ -0,0 +1,2334 @@ +-- MySQL dump 10.16 Distrib 10.1.41-MariaDB, for debian-linux-gnu (x86_64) +-- +-- Host: localhost Database: db_webqtl +-- ------------------------------------------------------ +-- Server version 10.5.8-MariaDB-log + +/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */; +/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */; +/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */; +/*!40101 SET NAMES utf8mb4 */; +/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */; +/*!40103 SET TIME_ZONE='+00:00' */; +/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */; +/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */; +/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */; +/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */; + +-- +-- Table structure for table `AccessLog` +-- + +DROP TABLE IF EXISTS `AccessLog`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `AccessLog` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `accesstime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', + `ip_address` char(20) NOT NULL DEFAULT '0.0.0.0', + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=1366832 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `AvgMethod` +-- + +DROP TABLE IF EXISTS `AvgMethod`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `AvgMethod` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `AvgMethodId` int(5) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `Normalization` varchar(30) DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=28 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `BXDSnpPosition` +-- + +DROP TABLE IF EXISTS `BXDSnpPosition`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `BXDSnpPosition` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `Chr` char(2) DEFAULT NULL, + `StrainId1` int(11) DEFAULT NULL, + `StrainId2` int(11) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `BXDSnpPosition` (`Chr`,`StrainId1`,`StrainId2`,`Mb`) +) ENGINE=MyISAM AUTO_INCREMENT=7791982 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CaseAttribute` +-- + +DROP TABLE IF EXISTS `CaseAttribute`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CaseAttribute` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(30) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=34 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CaseAttributeXRef` +-- + +DROP TABLE IF EXISTS `CaseAttributeXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CaseAttributeXRef` ( + `ProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `CaseAttributeId` smallint(5) NOT NULL DEFAULT 0, + `Value` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`ProbeSetFreezeId`,`StrainId`,`CaseAttributeId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CaseAttributeXRefNew` +-- + +DROP TABLE IF EXISTS `CaseAttributeXRefNew`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CaseAttributeXRefNew` ( + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` int(8) unsigned NOT NULL DEFAULT 0, + `CaseAttributeId` smallint(5) NOT NULL DEFAULT 0, + `Value` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`InbredSetId`,`StrainId`,`CaseAttributeId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CeleraINFO_mm6` +-- + +DROP TABLE IF EXISTS `CeleraINFO_mm6`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CeleraINFO_mm6` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `SNPID` char(14) NOT NULL DEFAULT '', + `chromosome` char(3) DEFAULT NULL, + `MB_UCSC` double DEFAULT NULL, + `MB_celera` double DEFAULT NULL, + `allele_B6` char(4) DEFAULT NULL, + `allele_D2` char(4) DEFAULT NULL, + `allele_AJ` char(4) DEFAULT NULL, + `B6_D2` char(1) DEFAULT NULL, + `B6_AJ` char(1) DEFAULT NULL, + `D2_AJ` char(1) DEFAULT NULL, + `MB_UCSC_OLD` double DEFAULT NULL, + `allele_S1` char(4) DEFAULT NULL, + `allele_X1` char(4) DEFAULT NULL, + `flanking5` char(100) DEFAULT NULL, + `flanking3` char(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `celeraIndex` (`chromosome`,`MB_celera`), + KEY `celeraIndex2` (`chromosome`,`MB_UCSC`), + KEY `chromosome_2` (`chromosome`,`MB_UCSC`), + KEY `MB_UCSC_2` (`MB_UCSC`,`chromosome`), + KEY `SNPID` (`SNPID`) +) ENGINE=MyISAM AUTO_INCREMENT=3028848 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Chr_Length` +-- + +DROP TABLE IF EXISTS `Chr_Length`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Chr_Length` ( + `Name` char(3) NOT NULL DEFAULT '', + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, + `OrderId` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Length` int(10) unsigned NOT NULL DEFAULT 0, + `Length_2016` int(10) unsigned NOT NULL DEFAULT 0, + `Length_mm8` int(10) unsigned DEFAULT NULL, + UNIQUE KEY `nameIdx` (`SpeciesId`,`Name`), + UNIQUE KEY `SpeciesIdx` (`SpeciesId`,`OrderId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DBList` +-- + +DROP TABLE IF EXISTS `DBList`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DBList` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `DBTypeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `FreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` char(50) NOT NULL DEFAULT '', + `Code` char(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Cde` (`Code`), + KEY `DBIndex` (`DBTypeId`,`FreezeId`) +) ENGINE=MyISAM AUTO_INCREMENT=907 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DBType` +-- + +DROP TABLE IF EXISTS `DBType`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DBType` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` char(30) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DatasetMapInvestigator` +-- + +DROP TABLE IF EXISTS `DatasetMapInvestigator`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DatasetMapInvestigator` ( + `Id` mediumint(9) NOT NULL AUTO_INCREMENT, + `DatasetId` int(6) NOT NULL, + `InvestigatorId` int(6) NOT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=2403 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DatasetStatus` +-- + +DROP TABLE IF EXISTS `DatasetStatus`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DatasetStatus` ( + `DatasetStatusId` int(5) NOT NULL, + `DatasetStatusName` varchar(20) DEFAULT NULL, + UNIQUE KEY `DatasetStatusId` (`DatasetStatusId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Dataset_mbat` +-- + +DROP TABLE IF EXISTS `Dataset_mbat`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Dataset_mbat` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `switch` int(1) DEFAULT NULL, + `species` varchar(255) DEFAULT NULL, + `cross` varchar(255) DEFAULT NULL, + `tissue` varchar(255) DEFAULT NULL, + `database` varchar(255) DEFAULT NULL, + `database_LongName` varchar(255) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=16 DEFAULT CHARSET=utf8; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Datasets` +-- + +DROP TABLE IF EXISTS `Datasets`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Datasets` ( + `DatasetId` int(6) NOT NULL AUTO_INCREMENT, + `DatasetName` varchar(255) DEFAULT NULL, + `GeoSeries` varchar(30) DEFAULT NULL, + `PublicationTitle` longtext DEFAULT NULL, + `Summary` longtext DEFAULT NULL, + `ExperimentDesign` longtext DEFAULT NULL, + `AboutCases` longtext DEFAULT NULL, + `AboutTissue` longtext DEFAULT NULL, + `AboutPlatform` longtext DEFAULT NULL, + `AboutDataProcessing` longtext DEFAULT NULL, + `Contributors` longtext DEFAULT NULL, + `Citation` longtext DEFAULT NULL, + `Acknowledgment` longtext DEFAULT NULL, + `Notes` longtext DEFAULT NULL, + `InvestigatorId` int(5) NOT NULL, + `DatasetStatusId` int(5) NOT NULL, + PRIMARY KEY (`DatasetId`), + UNIQUE KEY `DatasetId` (`DatasetId`) +) ENGINE=MyISAM AUTO_INCREMENT=301 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Docs` +-- + +DROP TABLE IF EXISTS `Docs`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Docs` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `entry` varchar(255) NOT NULL, + `title` varchar(255) NOT NULL, + `content` text NOT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=10 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `EnsemblChip` +-- + +DROP TABLE IF EXISTS `EnsemblChip`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `EnsemblChip` ( + `Id` int(11) NOT NULL, + `ProbeSetSize` int(11) NOT NULL, + `Name` varchar(40) NOT NULL, + `Type` enum('AFFY','OLIGO') DEFAULT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `EnsemblProbe` +-- + +DROP TABLE IF EXISTS `EnsemblProbe`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `EnsemblProbe` ( + `Id` int(11) NOT NULL, + `ChipId` int(11) NOT NULL, + `ProbeSet` varchar(40) DEFAULT NULL, + `Name` varchar(40) DEFAULT NULL, + `length` int(11) NOT NULL, + KEY `EnsemblProbeId` (`Id`), + KEY `EnsemblProbeName` (`Name`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `EnsemblProbeLocation` +-- + +DROP TABLE IF EXISTS `EnsemblProbeLocation`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `EnsemblProbeLocation` ( + `Chr` char(2) NOT NULL, + `Start` int(11) NOT NULL, + `Start_2016` int(11) DEFAULT NULL, + `End` int(11) NOT NULL, + `End_2016` int(11) DEFAULT NULL, + `Strand` int(11) NOT NULL, + `MisMataches` int(11) DEFAULT NULL, + `ProbeId` int(11) NOT NULL, + KEY `EnsemblLocationProbeId` (`ProbeId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GORef` +-- + +DROP TABLE IF EXISTS `GORef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GORef` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `goterm` varchar(255) DEFAULT NULL, + `genes` text DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=17510 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Genbank` +-- + +DROP TABLE IF EXISTS `Genbank`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Genbank` ( + `Id` varchar(20) NOT NULL DEFAULT '', + `Sequence` text DEFAULT NULL, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, + PRIMARY KEY (`Id`), + KEY `Id` (`Id`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneCategory` +-- + +DROP TABLE IF EXISTS `GeneCategory`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneCategory` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` char(255) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`), + KEY `name_idx` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=22 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneChip` +-- + +DROP TABLE IF EXISTS `GeneChip`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneChip` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `GeneChipId` int(5) DEFAULT NULL, + `GeneChipName` varchar(200) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `GeoPlatform` char(15) DEFAULT NULL, + `Title` varchar(100) DEFAULT NULL, + `SpeciesId` int(5) DEFAULT 1, + `GO_tree_value` varchar(50) DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=67 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneChipEnsemblXRef` +-- + +DROP TABLE IF EXISTS `GeneChipEnsemblXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneChipEnsemblXRef` ( + `GeneChipId` int(11) NOT NULL, + `EnsemblChipId` int(11) NOT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneIDXRef` +-- + +DROP TABLE IF EXISTS `GeneIDXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneIDXRef` ( + `mouse` int(11) NOT NULL DEFAULT 0, + `rat` int(11) NOT NULL DEFAULT 0, + `human` int(11) NOT NULL DEFAULT 0, + KEY `mouse_index` (`mouse`), + KEY `rat_index` (`rat`), + KEY `human_index` (`human`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneList` +-- + +DROP TABLE IF EXISTS `GeneList`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneList` ( + `SpeciesId` int(5) unsigned NOT NULL DEFAULT 1, + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `GeneSymbol` varchar(15) DEFAULT NULL, + `GeneDescription` text DEFAULT NULL, + `Chromosome` varchar(10) DEFAULT NULL, + `TxStart` double DEFAULT NULL, + `TxStart_2016` double DEFAULT NULL, + `TxEnd` double DEFAULT NULL, + `TxEnd_2016` double DEFAULT NULL, + `Strand` char(1) DEFAULT NULL, + `GeneID` varchar(10) DEFAULT NULL, + `NM_ID` varchar(15) DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + `GenBankID` varchar(15) DEFAULT NULL, + `UnigenID` varchar(15) DEFAULT NULL, + `ProteinID` varchar(15) DEFAULT NULL, + `AlignID` varchar(10) DEFAULT NULL, + `exonCount` int(7) NOT NULL DEFAULT 0, + `exonStarts` text DEFAULT NULL, + `exonEnds` text DEFAULT NULL, + `cdsStart` double DEFAULT NULL, + `cdsStart_2016` double DEFAULT NULL, + `cdsEnd` double DEFAULT NULL, + `cdsEnd_2016` double DEFAULT NULL, + `TxStart_mm8` double DEFAULT NULL, + `TxEnd_mm8` double DEFAULT NULL, + `Strand_mm8` char(1) DEFAULT NULL, + `exonCount_mm8` int(7) DEFAULT NULL, + `exonStarts_mm8` text DEFAULT NULL, + `exonEnds_mm8` text DEFAULT NULL, + `cdsStart_mm8` double DEFAULT NULL, + `cdsEnd_mm8` double DEFAULT NULL, + `Chromosome_mm8` varchar(10) DEFAULT NULL, + `Info_mm9` text DEFAULT NULL, + `RGD_ID` int(10) DEFAULT NULL, + UNIQUE KEY `geneId` (`SpeciesId`,`Id`), + KEY `geneSymbol` (`GeneSymbol`), + KEY `geneSymbol2` (`SpeciesId`,`GeneSymbol`), + KEY `Loc1` (`SpeciesId`,`Chromosome`,`TxStart`), + KEY `Loc2` (`SpeciesId`,`Chromosome`,`TxEnd`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneList_rn3` +-- + +DROP TABLE IF EXISTS `GeneList_rn3`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneList_rn3` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `ProbeSet` varchar(16) DEFAULT NULL, + `geneSymbol` varchar(15) DEFAULT NULL, + `geneID` varchar(10) DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + `geneDescription` text DEFAULT NULL, + `genBankID` varchar(15) DEFAULT NULL, + `unigenID` varchar(15) DEFAULT NULL, + `score` int(4) DEFAULT NULL, + `qStart` int(3) DEFAULT NULL, + `qEnd` int(3) DEFAULT NULL, + `qSize` int(3) DEFAULT NULL, + `identity` varchar(7) DEFAULT NULL, + `chromosome` varchar(8) DEFAULT NULL, + `strand` char(1) DEFAULT NULL, + `txStart` double DEFAULT NULL, + `txEnd` double DEFAULT NULL, + `txSize` double DEFAULT NULL, + `span` int(7) DEFAULT NULL, + `specificity` double DEFAULT NULL, + `sequence` text DEFAULT NULL, + `flag` int(1) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `geneSymbol` (`geneSymbol`), + KEY `Loc1` (`chromosome`,`txStart`), + KEY `Loc2` (`chromosome`,`txEnd`) +) ENGINE=MyISAM AUTO_INCREMENT=14917 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneList_rn33` +-- + +DROP TABLE IF EXISTS `GeneList_rn33`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneList_rn33` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `geneSymbol` varchar(15) DEFAULT NULL, + `txStart` double DEFAULT NULL, + `txEnd` double DEFAULT NULL, + `exonCount` int(7) DEFAULT NULL, + `NM_ID` varchar(15) DEFAULT NULL, + `chromosome` varchar(8) DEFAULT NULL, + `strand` char(1) DEFAULT NULL, + `cdsStart` double DEFAULT NULL, + `cdsEnd` double DEFAULT NULL, + `exonStarts` text DEFAULT NULL, + `exonEnds` text DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `geneSymbol` (`geneSymbol`), + KEY `Loc1` (`chromosome`,`txStart`), + KEY `Loc2` (`chromosome`,`txEnd`) +) ENGINE=MyISAM AUTO_INCREMENT=9790 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneMap_cuiyan` +-- + +DROP TABLE IF EXISTS `GeneMap_cuiyan`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneMap_cuiyan` ( + `id` bigint(20) NOT NULL AUTO_INCREMENT, + `TranscriptID` varchar(255) DEFAULT NULL, + `GeneID` varchar(255) DEFAULT NULL, + `Symbol` varchar(255) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=10537 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneRIF` +-- + +DROP TABLE IF EXISTS `GeneRIF`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneRIF` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `versionId` smallint(5) unsigned NOT NULL DEFAULT 0, + `symbol` varchar(30) NOT NULL DEFAULT '', + `PubMed_ID` varchar(255) DEFAULT NULL, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 1, + `comment` text DEFAULT NULL, + `email` varchar(50) DEFAULT NULL, + `createtime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', + `user_ip` varchar(20) DEFAULT NULL, + `weburl` varchar(255) DEFAULT NULL, + `initial` varchar(10) DEFAULT NULL, + `display` tinyint(4) DEFAULT 1, + `reason` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`,`versionId`), + KEY `name_idx` (`symbol`), + KEY `status` (`display`), + KEY `timestamp` (`createtime`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneRIFXRef` +-- + +DROP TABLE IF EXISTS `GeneRIFXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneRIFXRef` ( + `GeneRIFId` int(10) unsigned NOT NULL DEFAULT 0, + `versionId` smallint(5) unsigned NOT NULL DEFAULT 0, + `GeneCategoryId` smallint(5) unsigned NOT NULL DEFAULT 0, + PRIMARY KEY (`GeneRIFId`,`versionId`,`GeneCategoryId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneRIF_BASIC` +-- + +DROP TABLE IF EXISTS `GeneRIF_BASIC`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneRIF_BASIC` ( + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 1, + `GeneId` int(10) unsigned NOT NULL DEFAULT 0, + `symbol` varchar(255) NOT NULL DEFAULT '', + `PubMed_ID` int(10) unsigned NOT NULL DEFAULT 0, + `createtime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', + `comment` text DEFAULT NULL, + `VersionId` tinyint(3) unsigned NOT NULL AUTO_INCREMENT, + PRIMARY KEY (`GeneId`,`SpeciesId`,`createtime`,`PubMed_ID`,`VersionId`), + KEY `symbol` (`symbol`,`SpeciesId`,`createtime`), + FULLTEXT KEY `commts` (`comment`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Geno` +-- + +DROP TABLE IF EXISTS `Geno`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Geno` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 1, + `Name` varchar(40) NOT NULL DEFAULT '', + `Marker_Name` varchar(40) DEFAULT NULL, + `Chr` char(3) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + `Sequence` text DEFAULT NULL, + `Source` varchar(40) DEFAULT NULL, + `chr_num` smallint(5) unsigned DEFAULT NULL, + `Source2` varchar(40) DEFAULT NULL, + `Comments` varchar(255) DEFAULT NULL, + `used_by_geno_file` varchar(40) DEFAULT NULL, + `Mb_mm8` double DEFAULT NULL, + `Chr_mm8` char(3) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `species_name` (`SpeciesId`,`Name`), + KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=716770 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoCode` +-- + +DROP TABLE IF EXISTS `GenoCode`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoCode` ( + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 1, + `AlleleType` char(3) NOT NULL DEFAULT '', + `AlleleSymbol` char(2) NOT NULL DEFAULT '', + `DatabaseValue` smallint(5) DEFAULT NULL, + PRIMARY KEY (`InbredSetId`,`AlleleType`,`AlleleSymbol`), + UNIQUE KEY `InbredSetId_AlleleType` (`InbredSetId`,`AlleleType`), + UNIQUE KEY `InbredSetId_AlleleSymbol` (`InbredSetId`,`AlleleSymbol`), + UNIQUE KEY `InbredSetId_DatabaseValue` (`InbredSetId`,`DatabaseValue`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoData` +-- + +DROP TABLE IF EXISTS `GenoData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`) +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoFile` +-- + +DROP TABLE IF EXISTS `GenoFile`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoFile` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `server` varchar(100) NOT NULL, + `InbredSetID` int(11) NOT NULL, + `location` varchar(255) NOT NULL, + `title` varchar(255) NOT NULL, + `sort` int(3) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=5 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoFreeze` +-- + +DROP TABLE IF EXISTS `GenoFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '2001-01-01', + `public` tinyint(4) NOT NULL DEFAULT 0, + `InbredSetId` smallint(5) unsigned DEFAULT 1, + `confidentiality` tinyint(3) unsigned DEFAULT 0, + `AuthorisedUsers` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=37 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoSE` +-- + +DROP TABLE IF EXISTS `GenoSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoXRef` +-- + +DROP TABLE IF EXISTS `GenoXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoXRef` ( + `GenoFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `GenoId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `cM` double DEFAULT 0, + `Used_for_mapping` char(1) DEFAULT 'N', + UNIQUE KEY `ProbeSetId` (`GenoFreezeId`,`GenoId`), + UNIQUE KEY `DataId` (`DataId`), + KEY `GenoId` (`GenoId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `H2` +-- + +DROP TABLE IF EXISTS `H2`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `H2` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `ICH2` double NOT NULL DEFAULT 0, + `H2SE` double NOT NULL DEFAULT 0, + `HPH2` double NOT NULL DEFAULT 0, + UNIQUE KEY `DataId` (`DataId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Homologene` +-- + +DROP TABLE IF EXISTS `Homologene`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Homologene` ( + `HomologeneId` int(11) DEFAULT NULL, + `GeneId` int(11) DEFAULT NULL, + `TaxonomyId` int(11) DEFAULT NULL, + KEY `GeneId` (`GeneId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `InbredSet` +-- + +DROP TABLE IF EXISTS `InbredSet`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `InbredSet` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `InbredSetId` int(5) DEFAULT NULL, + `InbredSetName` varchar(100) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `SpeciesId` smallint(5) unsigned DEFAULT 1, + `FullName` varchar(100) DEFAULT NULL, + `public` tinyint(3) unsigned DEFAULT 2, + `MappingMethodId` char(50) DEFAULT '1', + `GeneticType` varchar(255) DEFAULT NULL, + `Family` varchar(100) DEFAULT NULL, + `FamilyOrder` int(5) DEFAULT NULL, + `MenuOrderId` double NOT NULL, + `InbredSetCode` varchar(5) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `Name` (`Name`), + KEY `SpeciesId` (`SpeciesId`), + KEY `Id` (`Id`), + KEY `InbredSetCode` (`InbredSetCode`) +) ENGINE=MyISAM AUTO_INCREMENT=83 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `IndelAll` +-- + +DROP TABLE IF EXISTS `IndelAll`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `IndelAll` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` smallint(5) unsigned DEFAULT 1, + `SourceId` smallint(5) unsigned DEFAULT NULL, + `Name` char(30) DEFAULT NULL, + `Chromosome` char(2) DEFAULT NULL, + `Mb_start` double DEFAULT NULL, + `Mb_start_2016` double DEFAULT NULL, + `Strand` char(1) DEFAULT NULL, + `Type` char(15) DEFAULT NULL, + `Mb_end` double DEFAULT NULL, + `Mb_end_2016` double DEFAULT NULL, + `Size` double DEFAULT NULL, + `InDelSequence` char(30) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `SnpId` (`SpeciesId`,`Name`), + KEY `SnpId2` (`Name`), + KEY `Position` (`SpeciesId`,`Chromosome`,`Mb_start`) USING BTREE +) ENGINE=MyISAM AUTO_INCREMENT=142895 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `IndelXRef` +-- + +DROP TABLE IF EXISTS `IndelXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `IndelXRef` ( + `IndelId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId1` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId2` smallint(5) unsigned DEFAULT NULL, + PRIMARY KEY (`IndelId`,`StrainId1`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `InfoFiles` +-- + +DROP TABLE IF EXISTS `InfoFiles`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `InfoFiles` ( + `DatasetId` int(5) DEFAULT NULL, + `SpeciesId` int(5) DEFAULT NULL, + `TissueId` int(5) DEFAULT NULL, + `InbredSetId` int(5) DEFAULT NULL, + `GeneChipId` int(5) DEFAULT NULL, + `AvgMethodId` int(5) DEFAULT NULL, + `InfoFileTitle` longtext DEFAULT NULL, + `Specifics` longtext DEFAULT NULL, + `Status` varchar(255) DEFAULT NULL, + `Title` varchar(255) DEFAULT NULL, + `Organism` varchar(255) DEFAULT NULL, + `Experiment_Type` longtext DEFAULT NULL, + `Summary` longtext DEFAULT NULL, + `Overall_Design` longtext DEFAULT NULL, + `Contributor` longtext DEFAULT NULL, + `Citation` longtext DEFAULT NULL, + `Submission_Date` varchar(255) DEFAULT NULL, + `Contact_Name` varchar(255) DEFAULT NULL, + `Emails` varchar(255) DEFAULT NULL, + `Phone` varchar(255) DEFAULT NULL, + `URL` varchar(255) DEFAULT NULL, + `Organization_Name` varchar(255) DEFAULT NULL, + `Department` varchar(255) DEFAULT NULL, + `Laboratory` varchar(255) DEFAULT NULL, + `Street` varchar(255) DEFAULT NULL, + `City` varchar(255) DEFAULT NULL, + `State` varchar(255) DEFAULT NULL, + `ZIP` varchar(255) DEFAULT NULL, + `Country` varchar(255) DEFAULT NULL, + `Platforms` varchar(255) DEFAULT NULL, + `Samples` longtext DEFAULT NULL, + `Species` varchar(255) DEFAULT NULL, + `Normalization` varchar(255) DEFAULT NULL, + `InbredSet` varchar(255) DEFAULT NULL, + `InfoPageName` varchar(255) NOT NULL, + `DB_Name` varchar(255) DEFAULT NULL, + `Organism_Id` varchar(60) DEFAULT NULL, + `InfoPageTitle` varchar(255) DEFAULT NULL, + `GN_AccesionId` int(4) DEFAULT NULL, + `Tissue` varchar(60) DEFAULT NULL, + `AuthorizedUsers` varchar(100) DEFAULT NULL, + `About_Cases` longtext DEFAULT NULL, + `About_Tissue` longtext DEFAULT NULL, + `About_Download` longtext DEFAULT NULL, + `About_Array_Platform` longtext DEFAULT NULL, + `About_Data_Values_Processing` longtext DEFAULT NULL, + `Data_Source_Acknowledge` longtext DEFAULT NULL, + `Progreso` varchar(20) DEFAULT NULL, + `QualityControlStatus` longtext DEFAULT NULL, + `InfoFileId` int(6) NOT NULL AUTO_INCREMENT, + PRIMARY KEY (`InfoFileId`), + UNIQUE KEY `InfoPageName` (`InfoPageName`), + UNIQUE KEY `GN_AccesionId` (`GN_AccesionId`) +) ENGINE=MyISAM AUTO_INCREMENT=1470 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `InfoFilesUser_md5` +-- + +DROP TABLE IF EXISTS `InfoFilesUser_md5`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `InfoFilesUser_md5` ( + `Username` varchar(16) DEFAULT NULL, + `Password` varchar(32) DEFAULT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Investigators` +-- + +DROP TABLE IF EXISTS `Investigators`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Investigators` ( + `FirstName` varchar(20) DEFAULT NULL, + `LastName` varchar(20) DEFAULT NULL, + `Address` varchar(200) DEFAULT NULL, + `City` varchar(20) DEFAULT NULL, + `State` varchar(20) DEFAULT NULL, + `ZipCode` varchar(20) DEFAULT NULL, + `Phone` varchar(200) DEFAULT NULL, + `Email` varchar(200) DEFAULT NULL, + `Country` varchar(35) DEFAULT NULL, + `Url` text DEFAULT NULL, + `UserName` varchar(30) DEFAULT NULL, + `UserPass` varchar(50) DEFAULT NULL, + `UserDate` datetime /* mariadb-5.3 */ DEFAULT NULL, + `UserLevel` int(8) DEFAULT NULL, + `OrganizationId` int(5) NOT NULL, + `InvestigatorId` int(5) NOT NULL AUTO_INCREMENT, + PRIMARY KEY (`InvestigatorId`) +) ENGINE=MyISAM AUTO_INCREMENT=151 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `LCorrRamin3` +-- + +DROP TABLE IF EXISTS `LCorrRamin3`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `LCorrRamin3` ( + `GeneId1` int(12) unsigned DEFAULT NULL, + `GeneId2` int(12) unsigned DEFAULT NULL, + `value` double DEFAULT NULL, + KEY `GeneId1` (`GeneId1`), + KEY `GeneId2` (`GeneId2`), + KEY `GeneId1_2` (`GeneId1`,`GeneId2`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `MachineAccessLog` +-- + +DROP TABLE IF EXISTS `MachineAccessLog`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `MachineAccessLog` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `accesstime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', + `ip_address` char(20) NOT NULL DEFAULT '0.0.0.0', + `db_id` tinyint(3) unsigned NOT NULL DEFAULT 0, + `data_id` int(10) unsigned DEFAULT NULL, + `action` char(10) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=514946 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `MappingMethod` +-- + +DROP TABLE IF EXISTS `MappingMethod`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `MappingMethod` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=6 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `NStrain` +-- + +DROP TABLE IF EXISTS `NStrain`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `NStrain` ( + `DataId` int(10) unsigned DEFAULT NULL, + `StrainId` smallint(5) unsigned DEFAULT NULL, + `count` varchar(5) DEFAULT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `News` +-- + +DROP TABLE IF EXISTS `News`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `News` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `date` date DEFAULT NULL, + `details` text DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=296 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Organizations` +-- + +DROP TABLE IF EXISTS `Organizations`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Organizations` ( + `OrganizationId` int(5) NOT NULL AUTO_INCREMENT, + `OrganizationName` varchar(200) NOT NULL, + PRIMARY KEY (`OrganizationId`), + UNIQUE KEY `OrganizationId` (`OrganizationId`), + UNIQUE KEY `OrganizationName` (`OrganizationName`) +) ENGINE=MyISAM AUTO_INCREMENT=92 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Phenotype` +-- + +DROP TABLE IF EXISTS `Phenotype`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Phenotype` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Pre_publication_description` text DEFAULT NULL, + `Post_publication_description` text DEFAULT NULL, + `Original_description` text DEFAULT NULL, + `Units` varchar(100) NOT NULL DEFAULT 'Unknown', + `Pre_publication_abbreviation` varchar(40) DEFAULT NULL, + `Post_publication_abbreviation` varchar(40) DEFAULT NULL, + `Lab_code` varchar(255) DEFAULT NULL, + `Submitter` varchar(255) DEFAULT NULL, + `Owner` varchar(255) DEFAULT NULL, + `Authorized_Users` varchar(255) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `Post_publication_description_Index` (`Post_publication_description`(255)), + KEY `Pre_publication_description_Index` (`Pre_publication_description`(255)), + KEY `Pre_publication_abbreviation_Index` (`Pre_publication_abbreviation`), + KEY `Post_publication_abbreviation_Index` (`Post_publication_abbreviation`), + KEY `Lab_code` (`Lab_code`), + FULLTEXT KEY `Post_publication_description` (`Post_publication_description`), + FULLTEXT KEY `Pre_publication_description` (`Pre_publication_description`), + FULLTEXT KEY `Pre_publication_abbreviation` (`Pre_publication_abbreviation`), + FULLTEXT KEY `Post_publication_abbreviation` (`Post_publication_abbreviation`), + FULLTEXT KEY `Lab_code1` (`Lab_code`), + FULLTEXT KEY `SEARCH_FULL_IDX` (`Post_publication_description`,`Pre_publication_description`,`Pre_publication_abbreviation`,`Post_publication_abbreviation`,`Lab_code`) +) ENGINE=MyISAM AUTO_INCREMENT=29299 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Probe` +-- + +DROP TABLE IF EXISTS `Probe`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Probe` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `ProbeSetId` int(10) unsigned NOT NULL DEFAULT 0, + `Name` char(20) DEFAULT NULL, + `Sequence` char(30) DEFAULT NULL, + `ExonNo` char(7) DEFAULT NULL, + `SerialOrder` double DEFAULT NULL, + `Tm` double DEFAULT NULL, + `E_GSB` double DEFAULT NULL, + `E_NSB` double DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `ProbeSetId` (`ProbeSetId`,`Name`), + KEY `SerialOrder` (`ProbeSetId`,`SerialOrder`) +) ENGINE=MyISAM AUTO_INCREMENT=19054073 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeData` +-- + +DROP TABLE IF EXISTS `ProbeData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`) +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeFreeze` +-- + +DROP TABLE IF EXISTS `ProbeFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `ProbeFreezeId` int(5) DEFAULT NULL, + `ChipId` smallint(5) unsigned NOT NULL DEFAULT 0, + `TissueId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `InbredSetId` smallint(5) unsigned DEFAULT 1, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`), + KEY `TissueId` (`TissueId`), + KEY `InbredSetId` (`InbredSetId`) +) ENGINE=MyISAM AUTO_INCREMENT=416 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeH2` +-- + +DROP TABLE IF EXISTS `ProbeH2`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeH2` ( + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeId` int(10) unsigned NOT NULL DEFAULT 0, + `h2` double DEFAULT NULL, + `weight` double DEFAULT NULL, + UNIQUE KEY `ProbeId` (`ProbeFreezeId`,`ProbeId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSE` +-- + +DROP TABLE IF EXISTS `ProbeSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSet` +-- + +DROP TABLE IF EXISTS `ProbeSet`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSet` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `ChipId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(100) DEFAULT NULL, + `TargetId` varchar(150) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `description` longtext DEFAULT NULL, + `Chr` char(3) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Chr_2016` char(3) DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + `alias` longtext DEFAULT NULL, + `GeneId` varchar(20) DEFAULT NULL, + `GenbankId` varchar(1000) DEFAULT NULL, + `SNP` int(2) DEFAULT NULL, + `BlatSeq` text NOT NULL, + `TargetSeq` text DEFAULT NULL, + `UniGeneId` varchar(100) DEFAULT NULL, + `Strand_Probe` char(1) DEFAULT NULL, + `Strand_Gene` char(1) DEFAULT NULL, + `OMIM` varchar(20) DEFAULT NULL, + `comments` text NOT NULL, + `Probe_set_target_region` varchar(255) DEFAULT NULL, + `Probe_set_specificity` double DEFAULT NULL, + `Probe_set_BLAT_score` double DEFAULT NULL, + `Probe_set_Blat_Mb_start` double DEFAULT NULL, + `Probe_set_Blat_Mb_end` double DEFAULT NULL, + `Probe_set_Blat_Mb_start_2016` double DEFAULT NULL, + `Probe_set_Blat_Mb_end_2016` double DEFAULT NULL, + `Probe_set_strand` varchar(255) DEFAULT NULL, + `Probe_set_Note_by_RW` varchar(255) DEFAULT NULL, + `flag` char(1) DEFAULT NULL, + `Symbol_H` varchar(100) DEFAULT NULL, + `description_H` varchar(255) DEFAULT NULL, + `chromosome_H` char(3) DEFAULT NULL, + `MB_H` double DEFAULT NULL, + `alias_H` varchar(255) DEFAULT NULL, + `GeneId_H` varchar(20) DEFAULT NULL, + `chr_num` smallint(5) unsigned DEFAULT 30, + `name_num` int(10) unsigned DEFAULT 4294967290, + `Probe_Target_Description` varchar(225) DEFAULT NULL, + `RefSeq_TranscriptId` varchar(255) DEFAULT NULL, + `ENSEMBLGeneId` varchar(50) DEFAULT NULL, + `Chr_mm8` char(3) DEFAULT NULL, + `Mb_mm8` double DEFAULT NULL, + `Probe_set_Blat_Mb_start_mm8` double DEFAULT NULL, + `Probe_set_Blat_Mb_end_mm8` double DEFAULT NULL, + `HomoloGeneID` varchar(20) DEFAULT NULL, + `Biotype_ENS` varchar(255) DEFAULT NULL, + `ProteinID` varchar(50) DEFAULT NULL, + `ProteinName` varchar(50) DEFAULT NULL, + `UniProtID` varchar(20) DEFAULT NULL, + `Flybase_Id` varchar(25) DEFAULT NULL, + `RGD_ID` int(10) DEFAULT NULL, + `HMDB_ID` varchar(255) DEFAULT NULL, + `Confidence` int(5) DEFAULT NULL, + `ChEBI_ID` int(10) DEFAULT NULL, + `ChEMBL_ID` varchar(100) DEFAULT NULL, + `CAS_number` varchar(100) DEFAULT NULL, + `PubChem_ID` int(10) DEFAULT NULL, + `ChemSpider_ID` int(10) DEFAULT NULL, + `UNII_ID` varchar(100) DEFAULT NULL, + `EC_number` varchar(100) DEFAULT NULL, + `KEGG_ID` varchar(100) DEFAULT NULL, + `Molecular_Weight` double DEFAULT NULL, + `Nugowiki_ID` int(10) DEFAULT NULL, + `Type` varchar(255) DEFAULT NULL, + `Tissue` varchar(255) DEFAULT NULL, + `PrimaryName` varchar(255) DEFAULT NULL, + `SecondaryNames` longtext DEFAULT NULL, + `PeptideSequence` varchar(20) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `ProbeSetId` (`ChipId`,`Name`), + KEY `Name_IDX` (`Name`), + KEY `symbol_IDX` (`Symbol`), + KEY `RefSeq_TranscriptId` (`RefSeq_TranscriptId`), + KEY `GENBANK_IDX` (`GenbankId`), + KEY `TargetId` (`TargetId`), + KEY `Position` (`Chr`), + KEY `GeneId_IDX` (`GeneId`), + FULLTEXT KEY `SEARCH_GENE_IDX` (`Symbol`,`alias`), + FULLTEXT KEY `SEARCH_FULL_IDX` (`Name`,`description`,`Symbol`,`alias`,`GenbankId`,`UniGeneId`,`Probe_Target_Description`), + FULLTEXT KEY `RefSeq_FULL_IDX` (`RefSeq_TranscriptId`) +) ENGINE=MyISAM AUTO_INCREMENT=12118724 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetData` +-- + +DROP TABLE IF EXISTS `ProbeSetData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`) +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetFreeze` +-- + +DROP TABLE IF EXISTS `ProbeSetFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `AvgID` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(40) DEFAULT NULL, + `Name2` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `OrderList` int(5) DEFAULT NULL, + `public` tinyint(4) NOT NULL DEFAULT 0, + `confidentiality` tinyint(4) NOT NULL DEFAULT 0, + `AuthorisedUsers` varchar(300) NOT NULL, + `DataScale` varchar(20) NOT NULL DEFAULT 'log2', + PRIMARY KEY (`Id`), + UNIQUE KEY `FullName` (`FullName`), + UNIQUE KEY `Name` (`Name`), + KEY `NameIndex` (`Name2`), + KEY `ShortName` (`ShortName`), + KEY `ProbeFreezeId` (`ProbeFreezeId`), + KEY `conf_and_public` (`confidentiality`,`public`) +) ENGINE=MyISAM AUTO_INCREMENT=1006 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetSE` +-- + +DROP TABLE IF EXISTS `ProbeSetSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetXRef` +-- + +DROP TABLE IF EXISTS `ProbeSetXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetXRef` ( + `ProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeSetId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `Locus_old` char(20) DEFAULT NULL, + `LRS_old` double DEFAULT NULL, + `pValue_old` double DEFAULT NULL, + `mean` double DEFAULT NULL, + `se` double DEFAULT NULL, + `Locus` char(20) DEFAULT NULL, + `LRS` double DEFAULT NULL, + `pValue` double DEFAULT NULL, + `additive` double DEFAULT NULL, + `h2` float DEFAULT NULL, + UNIQUE KEY `ProbeSetId` (`ProbeSetFreezeId`,`ProbeSetId`), + UNIQUE KEY `DataId_IDX` (`DataId`), + KEY `ProbeSetId1` (`ProbeSetId`), + KEY `Locus` (`Locus`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeXRef` +-- + +DROP TABLE IF EXISTS `ProbeXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeXRef` ( + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + UNIQUE KEY `ProbeId` (`ProbeFreezeId`,`ProbeId`), + UNIQUE KEY `DataId_IDX` (`DataId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Publication` +-- + +DROP TABLE IF EXISTS `Publication`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Publication` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `PubMed_ID` int(10) unsigned DEFAULT NULL, + `Abstract` text DEFAULT NULL, + `Authors` text NOT NULL, + `Title` varchar(255) DEFAULT NULL, + `Journal` varchar(255) DEFAULT NULL, + `Volume` varchar(255) DEFAULT NULL, + `Pages` varchar(255) DEFAULT NULL, + `Month` varchar(255) DEFAULT NULL, + `Year` varchar(255) NOT NULL DEFAULT '0', + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`PubMed_ID`), + KEY `PubMed_ID` (`PubMed_ID`), + FULLTEXT KEY `Abstract1` (`Abstract`), + FULLTEXT KEY `Title1` (`Title`), + FULLTEXT KEY `Authors1` (`Authors`), + FULLTEXT KEY `SEARCH_FULL_IDX` (`Abstract`,`Title`,`Authors`) +) ENGINE=MyISAM AUTO_INCREMENT=26076 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishData` +-- + +DROP TABLE IF EXISTS `PublishData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float(14,6) DEFAULT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishFreeze` +-- + +DROP TABLE IF EXISTS `PublishFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '2001-01-01', + `public` tinyint(4) NOT NULL DEFAULT 0, + `InbredSetId` smallint(5) unsigned DEFAULT 1, + `confidentiality` tinyint(3) DEFAULT 0, + `AuthorisedUsers` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `InbredSetId` (`InbredSetId`) +) ENGINE=MyISAM AUTO_INCREMENT=60 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishSE` +-- + +DROP TABLE IF EXISTS `PublishSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishXRef` +-- + +DROP TABLE IF EXISTS `PublishXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishXRef` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, + `PhenotypeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `PublicationId` smallint(5) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `mean` double DEFAULT NULL, + `Locus` char(50) DEFAULT NULL, + `LRS` double DEFAULT NULL, + `additive` double DEFAULT NULL, + `Sequence` smallint(5) unsigned NOT NULL DEFAULT 1, + `comments` text NOT NULL, + UNIQUE KEY `InbredSet` (`InbredSetId`,`Id`), + UNIQUE KEY `record` (`InbredSetId`,`PhenotypeId`,`PublicationId`,`Sequence`), + UNIQUE KEY `PhenotypeId` (`PhenotypeId`), + UNIQUE KEY `DataId` (`DataId`), + KEY `InbredSetId` (`InbredSetId`), + KEY `Locus` (`Locus`), + KEY `PublicationId` (`PublicationId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `RatSnpPattern` +-- + +DROP TABLE IF EXISTS `RatSnpPattern`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `RatSnpPattern` ( + `Id` int(12) NOT NULL AUTO_INCREMENT, + `SnpId` int(12) NOT NULL, + `BN` char(1) DEFAULT NULL, + `F344` char(1) DEFAULT NULL, + `ACI` char(1) DEFAULT NULL, + `BBDP` char(1) DEFAULT NULL, + `FHH` char(1) DEFAULT NULL, + `FHL` char(1) DEFAULT NULL, + `GK` char(1) DEFAULT NULL, + `LE` char(1) DEFAULT NULL, + `LEW` char(1) DEFAULT NULL, + `LH` char(1) DEFAULT NULL, + `LL` char(1) DEFAULT NULL, + `LN` char(1) DEFAULT NULL, + `MHS` char(1) DEFAULT NULL, + `MNS` char(1) DEFAULT NULL, + `SBH` char(1) DEFAULT NULL, + `SBN` char(1) DEFAULT NULL, + `SHR` char(1) DEFAULT NULL, + `SHRSP` char(1) DEFAULT NULL, + `SR` char(1) DEFAULT NULL, + `SS` char(1) DEFAULT NULL, + `WAG` char(1) DEFAULT NULL, + `WLI` char(1) DEFAULT NULL, + `WMI` char(1) DEFAULT NULL, + `WKY` char(1) DEFAULT NULL, + `ACI_N` char(1) DEFAULT NULL, + `BN_N` char(1) DEFAULT NULL, + `BUF_N` char(1) DEFAULT NULL, + `F344_N` char(1) DEFAULT NULL, + `M520_N` char(1) DEFAULT NULL, + `MR_N` char(1) DEFAULT NULL, + `WKY_N` char(1) DEFAULT NULL, + `WN_N` char(1) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `SnpId` (`SnpId`) +) ENGINE=MyISAM AUTO_INCREMENT=4711685 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Sample` +-- + +DROP TABLE IF EXISTS `Sample`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Sample` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(30) DEFAULT NULL, + `Age` smallint(6) NOT NULL DEFAULT 0, + `Sex` enum('F','M') NOT NULL DEFAULT 'F', + `CreateTime` date NOT NULL DEFAULT '2001-01-01', + `TissueType` varchar(30) DEFAULT NULL, + `FromSrc` varchar(10) DEFAULT NULL, + `ImageURL` varchar(100) DEFAULT NULL, + `CELURL` varchar(120) DEFAULT NULL, + `DATURL` varchar(100) DEFAULT NULL, + `CHPURL` varchar(100) DEFAULT NULL, + `RPTURL` varchar(100) DEFAULT NULL, + `EXPURL` varchar(100) DEFAULT NULL, + `TXTURL` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`StrainId`,`Name`,`CreateTime`) +) ENGINE=MyISAM AUTO_INCREMENT=252 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SampleXRef` +-- + +DROP TABLE IF EXISTS `SampleXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SampleXRef` ( + `SampleId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + PRIMARY KEY (`ProbeFreezeId`,`SampleId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpAll` +-- + +DROP TABLE IF EXISTS `SnpAll`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpAll` ( + `Id` int(20) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` smallint(5) unsigned DEFAULT 1, + `SnpName` char(30) DEFAULT NULL, + `Rs` char(30) DEFAULT NULL, + `Chromosome` char(2) DEFAULT NULL, + `Position` double DEFAULT NULL, + `Position_2016` double DEFAULT NULL, + `Alleles` char(5) DEFAULT NULL, + `Source` char(35) DEFAULT NULL, + `ConservationScore` double DEFAULT NULL, + `3Prime_UTR` text DEFAULT NULL, + `5Prime_UTR` text DEFAULT NULL, + `Upstream` text DEFAULT NULL, + `Downstream` text DEFAULT NULL, + `Intron` char(1) DEFAULT NULL, + `Non_Splice_Site` text DEFAULT NULL, + `Splice_Site` text DEFAULT NULL, + `Intergenic` char(1) DEFAULT NULL, + `Exon` char(1) DEFAULT NULL, + `Non_Synonymous_Coding` text DEFAULT NULL, + `Synonymous_Coding` text DEFAULT NULL, + `Start_Gained` text DEFAULT NULL, + `Start_Lost` text DEFAULT NULL, + `Stop_Gained` text DEFAULT NULL, + `Stop_Lost` text DEFAULT NULL, + `Unknown_Effect_In_Exon` text DEFAULT NULL, + `Domain` varchar(50) DEFAULT NULL, + `Gene` varchar(30) DEFAULT NULL, + `Transcript` varchar(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `SnpName` (`SnpName`), + KEY `Rs` (`Rs`), + KEY `Position` (`Chromosome`,`Position`), + KEY `Source` (`Source`) +) ENGINE=InnoDB AUTO_INCREMENT=84086331 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpAllRat` +-- + +DROP TABLE IF EXISTS `SnpAllRat`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpAllRat` ( + `Id` int(20) NOT NULL AUTO_INCREMENT, + `SpeciesId` int(5) DEFAULT 2, + `SnpName` char(30) DEFAULT NULL, + `Chromosome` char(2) DEFAULT NULL, + `Position` double DEFAULT NULL, + `Alleles` char(5) DEFAULT NULL, + `Source` char(35) DEFAULT NULL, + `ConservationScore` double DEFAULT NULL, + `Domain` varchar(50) DEFAULT NULL, + `Gene` varchar(30) DEFAULT NULL, + `Transcript` varchar(50) DEFAULT NULL, + `Function` varchar(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `SnpName` (`SnpName`), + KEY `Position` (`Chromosome`,`Position`), + KEY `Source` (`Source`) +) ENGINE=MyISAM AUTO_INCREMENT=97663615 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpAllele_to_be_deleted` +-- + +DROP TABLE IF EXISTS `SnpAllele_to_be_deleted`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpAllele_to_be_deleted` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Base` char(20) DEFAULT NULL, + `Info` char(255) DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpPattern` +-- + +DROP TABLE IF EXISTS `SnpPattern`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpPattern` ( + `SnpId` int(10) unsigned NOT NULL DEFAULT 0, + `129P2/OlaHsd` char(1) DEFAULT NULL, + `129S1/SvImJ` char(1) DEFAULT NULL, + `129S5/SvEvBrd` char(1) DEFAULT NULL, + `AKR/J` char(1) DEFAULT NULL, + `A/J` char(1) DEFAULT NULL, + `BALB/cJ` char(1) DEFAULT NULL, + `C3H/HeJ` char(1) DEFAULT NULL, + `C57BL/6J` char(1) DEFAULT NULL, + `CAST/EiJ` char(1) DEFAULT NULL, + `CBA/J` char(1) DEFAULT NULL, + `DBA/2J` char(1) DEFAULT NULL, + `LP/J` char(1) DEFAULT NULL, + `NOD/ShiLtJ` char(1) DEFAULT NULL, + `NZO/HlLtJ` char(1) DEFAULT NULL, + `PWK/PhJ` char(1) DEFAULT NULL, + `SPRET/EiJ` char(1) DEFAULT NULL, + `WSB/EiJ` char(1) DEFAULT NULL, + `PWD/PhJ` char(1) DEFAULT NULL, + `SJL/J` char(1) DEFAULT NULL, + `NZL/LtJ` char(1) DEFAULT NULL, + `CZECHII/EiJ` char(1) DEFAULT NULL, + `CALB/RkJ` char(1) DEFAULT NULL, + `ST/bJ` char(1) DEFAULT NULL, + `ISS/IbgTejJ` char(1) DEFAULT NULL, + `C57L/J` char(1) DEFAULT NULL, + `Qsi5` char(1) DEFAULT NULL, + `B6A6_Esline_Regeneron` char(1) DEFAULT NULL, + `129T2/SvEmsJ` char(1) DEFAULT NULL, + `BALB/cByJ` char(1) DEFAULT NULL, + `NZB/BlNJ` char(1) DEFAULT NULL, + `P/J` char(1) DEFAULT NULL, + `I/LnJ` char(1) DEFAULT NULL, + `PERC/EiJ` char(1) DEFAULT NULL, + `TALLYHO/JngJ` char(1) DEFAULT NULL, + `CE/J` char(1) DEFAULT NULL, + `MRL/MpJ` char(1) DEFAULT NULL, + `PERA/EiJ` char(1) DEFAULT NULL, + `IS/CamRkJ` char(1) DEFAULT NULL, + `ZALENDE/EiJ` char(1) DEFAULT NULL, + `Fline` char(1) DEFAULT NULL, + `BTBRT<+>tf/J` char(1) DEFAULT NULL, + `O20` char(1) DEFAULT NULL, + `C58/J` char(1) DEFAULT NULL, + `BPH/2J` char(1) DEFAULT NULL, + `DDK/Pas` char(1) DEFAULT NULL, + `C57BL/6NHsd` char(1) DEFAULT NULL, + `C57BL/6NTac` char(1) DEFAULT NULL, + `129S4/SvJae` char(1) DEFAULT NULL, + `BPL/1J` char(1) DEFAULT NULL, + `BPN/3J` char(1) DEFAULT NULL, + `PL/J` char(1) DEFAULT NULL, + `DBA/1J` char(1) DEFAULT NULL, + `MSM/Ms` char(1) DEFAULT NULL, + `MA/MyJ` char(1) DEFAULT NULL, + `NZW/LacJ` char(1) DEFAULT NULL, + `C57BL/10J` char(1) DEFAULT NULL, + `C57BL/6ByJ` char(1) DEFAULT NULL, + `RF/J` char(1) DEFAULT NULL, + `C57BR/cdJ` char(1) DEFAULT NULL, + `129S6/SvEv` char(1) DEFAULT NULL, + `MAI/Pas` char(1) DEFAULT NULL, + `RIIIS/J` char(1) DEFAULT NULL, + `C57BL/6NNIH` char(1) DEFAULT NULL, + `FVB/NJ` char(1) DEFAULT NULL, + `SEG/Pas` char(1) DEFAULT NULL, + `MOLF/EiJ` char(1) DEFAULT NULL, + `C3HeB/FeJ` char(1) DEFAULT NULL, + `Lline` char(1) DEFAULT NULL, + `SKIVE/EiJ` char(1) DEFAULT NULL, + `C57BL/6NCrl` char(1) DEFAULT NULL, + `KK/HlJ` char(1) DEFAULT NULL, + `LG/J` char(1) DEFAULT NULL, + `C57BLKS/J` char(1) DEFAULT NULL, + `SM/J` char(1) DEFAULT NULL, + `NOR/LtJ` char(1) DEFAULT NULL, + `ILS/IbgTejJ` char(1) DEFAULT NULL, + `C57BL/6JOlaHsd` char(1) DEFAULT NULL, + `SWR/J` char(1) DEFAULT NULL, + `C57BL/6JBomTac` char(1) DEFAULT NULL, + `SOD1/EiJ` char(1) DEFAULT NULL, + `NON/LtJ` char(1) DEFAULT NULL, + `JF1/Ms` char(1) DEFAULT NULL, + `129X1/SvJ` char(1) DEFAULT NULL, + `C2T1_Esline_Nagy` char(1) DEFAULT NULL, + `C57BL/6NJ` char(1) DEFAULT NULL, + `LEWES/EiJ` char(1) DEFAULT NULL, + `RBA/DnJ` char(1) DEFAULT NULL, + `DDY/JclSidSeyFrkJ` char(1) DEFAULT NULL, + `SEA/GnJ` char(1) DEFAULT NULL, + `C57BL/6JCrl` char(1) DEFAULT NULL, + `EL/SuzSeyFrkJ` char(1) DEFAULT NULL, + `HTG/GoSfSnJ` char(1) DEFAULT NULL, + `129S2/SvHsd` char(1) DEFAULT NULL, + `MOLG/DnJ` char(1) DEFAULT NULL, + `BUB/BnJ` char(1) DEFAULT NULL, + PRIMARY KEY (`SnpId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpSource` +-- + +DROP TABLE IF EXISTS `SnpSource`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpSource` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` char(35) DEFAULT NULL, + `DateCreated` date DEFAULT NULL, + `DateAdded` date DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=29 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Species` +-- + +DROP TABLE IF EXISTS `Species`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Species` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` int(5) DEFAULT NULL, + `SpeciesName` varchar(50) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `MenuName` char(50) DEFAULT NULL, + `FullName` char(100) NOT NULL DEFAULT '', + `TaxonomyId` int(11) DEFAULT NULL, + `OrderId` smallint(6) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Strain` +-- + +DROP TABLE IF EXISTS `Strain`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Strain` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) DEFAULT NULL, + `Name2` varchar(100) DEFAULT NULL, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Symbol` char(5) DEFAULT NULL, + `Alias` varchar(255) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`,`SpeciesId`), + KEY `Symbol` (`Symbol`) +) ENGINE=MyISAM AUTO_INCREMENT=63438 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `StrainXRef` +-- + +DROP TABLE IF EXISTS `StrainXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `StrainXRef` ( + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `OrderId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Used_for_mapping` char(1) DEFAULT 'N', + `PedigreeStatus` varchar(255) DEFAULT NULL, + PRIMARY KEY (`InbredSetId`,`StrainId`), + UNIQUE KEY `Orders` (`InbredSetId`,`OrderId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TableComments` +-- + +DROP TABLE IF EXISTS `TableComments`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TableComments` ( + `TableName` varchar(100) NOT NULL DEFAULT '', + `Comment` text DEFAULT NULL, + PRIMARY KEY (`TableName`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TableFieldAnnotation` +-- + +DROP TABLE IF EXISTS `TableFieldAnnotation`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TableFieldAnnotation` ( + `TableField` varchar(100) NOT NULL DEFAULT '', + `Foreign_Key` varchar(100) DEFAULT NULL, + `Annotation` text DEFAULT NULL, + PRIMARY KEY (`TableField`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Temp` +-- + +DROP TABLE IF EXISTS `Temp`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Temp` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `dbdisplayname` varchar(255) DEFAULT NULL, + `Name` varchar(30) DEFAULT NULL, + `description` text DEFAULT NULL, + `createtime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '2004-01-01 12:00:00', + `DataId` int(11) NOT NULL DEFAULT 0, + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 1, + `IP` varchar(20) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=98608 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TempData` +-- + +DROP TABLE IF EXISTS `TempData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TempData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` double NOT NULL DEFAULT 0, + `SE` double DEFAULT NULL, + `NStrain` smallint(6) DEFAULT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Tissue` +-- + +DROP TABLE IF EXISTS `Tissue`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Tissue` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `TissueId` int(5) DEFAULT NULL, + `TissueName` varchar(50) DEFAULT NULL, + `Name` char(50) DEFAULT NULL, + `Short_Name` char(30) NOT NULL DEFAULT '', + `BIRN_lex_ID` char(30) DEFAULT NULL, + `BIRN_lex_Name` char(30) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Short_Name` (`Short_Name`), + UNIQUE KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=180 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeFreeze` +-- + +DROP TABLE IF EXISTS `TissueProbeFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `ChipId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` varchar(100) NOT NULL DEFAULT '0', + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `InbredSetId` smallint(5) unsigned DEFAULT 1, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`), + UNIQUE KEY `FullName` (`FullName`) +) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeSetData` +-- + +DROP TABLE IF EXISTS `TissueProbeSetData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeSetData` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `TissueID` int(10) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL DEFAULT 0, + PRIMARY KEY (`Id`,`TissueID`) +) ENGINE=MyISAM AUTO_INCREMENT=90563 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeSetFreeze` +-- + +DROP TABLE IF EXISTS `TissueProbeSetFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeSetFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `TissueProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `AvgID` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(40) DEFAULT NULL, + `Name2` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `public` tinyint(4) NOT NULL DEFAULT 0, + `confidentiality` tinyint(4) NOT NULL DEFAULT 0, + `AuthorisedUsers` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `FullName` (`FullName`), + UNIQUE KEY `Name` (`Name`), + KEY `NameIndex` (`Name2`) +) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeSetXRef` +-- + +DROP TABLE IF EXISTS `TissueProbeSetXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeSetXRef` ( + `TissueProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbesetId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `Mean` float DEFAULT 0, + `useStatus` char(1) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `GeneId` varchar(20) DEFAULT NULL, + `Chr` char(3) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + `description` varchar(255) DEFAULT NULL, + `Probe_Target_Description` varchar(225) DEFAULT NULL, + PRIMARY KEY (`TissueProbeSetFreezeId`,`ProbesetId`), + UNIQUE KEY `DataId_IDX` (`DataId`), + KEY `symbol_IDX` (`Symbol`), + KEY `GeneId_IDX` (`GeneId`), + KEY `Position` (`Chr`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TraitMetadata` +-- + +DROP TABLE IF EXISTS `TraitMetadata`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TraitMetadata` ( + `type` varchar(255) DEFAULT NULL, + `value` longtext DEFAULT NULL +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `User` +-- + +DROP TABLE IF EXISTS `User`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `User` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `name` varchar(100) NOT NULL DEFAULT '', + `password` varchar(100) NOT NULL DEFAULT '', + `email` varchar(100) DEFAULT NULL, + `createtime` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', + `user_ip` varchar(20) DEFAULT NULL, + `lastlogin` datetime /* mariadb-5.3 */ NOT NULL DEFAULT '0000-00-00 00:00:00', + `disable` enum('Y','N') DEFAULT 'N', + `privilege` enum('guest','user','admin','root') DEFAULT NULL, + `grpName` varchar(40) DEFAULT NULL, + PRIMARY KEY (`id`), + UNIQUE KEY `name_index` (`name`) +) ENGINE=MyISAM AUTO_INCREMENT=353 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `UserPrivilege` +-- + +DROP TABLE IF EXISTS `UserPrivilege`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `UserPrivilege` ( + `UserId` int(10) unsigned NOT NULL, + `ProbeSetFreezeId` smallint(5) unsigned NOT NULL, + `download_result_priv` enum('N','Y') NOT NULL DEFAULT 'N', + KEY `userId` (`UserId`,`ProbeSetFreezeId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Vlookup` +-- + +DROP TABLE IF EXISTS `Vlookup`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Vlookup` ( + `Id` int(11) NOT NULL AUTO_INCREMENT, + `VLProbeSetId` text DEFAULT NULL, + `VLBlatSeq` longtext DEFAULT NULL, + `InfoFileId` int(5) DEFAULT NULL, + `DatasetId` int(5) DEFAULT NULL, + `SpeciesId` int(5) DEFAULT NULL, + `TissueId` int(5) DEFAULT NULL, + `InbredSetId` int(5) DEFAULT NULL, + `GeneChipId` int(5) DEFAULT NULL, + `AvgMethodId` int(5) DEFAULT NULL, + `InfoPageName` varchar(255) DEFAULT NULL, + `GN_AccesionId` int(5) DEFAULT NULL, + `Name` varchar(100) DEFAULT NULL, + `GeneId` varchar(10) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Chr` varchar(10) DEFAULT NULL, + `Probe_set_Blat_Mb_start` double DEFAULT NULL, + `Probe_set_Blat_Mb_end` double DEFAULT NULL, + `Strand` char(1) DEFAULT NULL, + `TxStart` double DEFAULT NULL, + `TxEnd` double DEFAULT NULL, + `cdsStart` double DEFAULT NULL, + `cdsEnd` double DEFAULT NULL, + `exonCount` int(7) DEFAULT NULL, + `exonStarts` text DEFAULT NULL, + `exonEnds` text DEFAULT NULL, + `ProteinID` varchar(15) DEFAULT NULL, + `AlignID` varchar(10) DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + `NM_ID` varchar(15) DEFAULT NULL, + `SnpName` char(30) DEFAULT NULL, + `Position` double DEFAULT NULL, + `HMDB_ID` varchar(255) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `description` longtext DEFAULT NULL, + `alias` longtext DEFAULT NULL, + `Full_Description` longtext DEFAULT NULL, + `BlatSeq` text DEFAULT NULL, + `ChEBI_ID` int(10) DEFAULT NULL, + `ChEMBL_ID` varchar(100) DEFAULT NULL, + `CAS_number` varchar(100) DEFAULT NULL, + `PubChem_ID` int(10) DEFAULT NULL, + `ChemSpider_ID` varchar(10) DEFAULT NULL, + `UNII_ID` varchar(100) DEFAULT NULL, + `EC_number` varchar(100) DEFAULT NULL, + `KEGG_ID` varchar(100) DEFAULT NULL, + `Molecular_Weight` varchar(100) DEFAULT NULL, + `Nugowiki_ID` varchar(100) DEFAULT NULL, + `assembly` varchar(10) DEFAULT NULL, + KEY `Id` (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=753474564 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `login` +-- + +DROP TABLE IF EXISTS `login`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `login` ( + `id` varchar(36) NOT NULL, + `user` varchar(36) DEFAULT NULL, + `timestamp` datetime /* mariadb-5.3 */ DEFAULT NULL, + `ip_address` varchar(39) DEFAULT NULL, + `successful` tinyint(1) NOT NULL, + `session_id` text DEFAULT NULL, + `assumed_by` varchar(36) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `user` (`user`), + KEY `assumed_by` (`assumed_by`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `metadata_audit` +-- + +DROP TABLE IF EXISTS `metadata_audit`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `metadata_audit` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `dataset_id` int(11) NOT NULL, + `editor` varchar(255) NOT NULL, + `json_diff_data` varchar(2048) NOT NULL, + `time_stamp` timestamp NOT NULL DEFAULT current_timestamp(), + PRIMARY KEY (`id`), + CONSTRAINT `CONSTRAINT_1` CHECK (json_valid(`json_diff_data`)) +) ENGINE=InnoDB AUTO_INCREMENT=3 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `pubmedsearch` +-- + +DROP TABLE IF EXISTS `pubmedsearch`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `pubmedsearch` ( + `id` bigint(20) NOT NULL AUTO_INCREMENT, + `pubmedid` bigint(20) DEFAULT NULL, + `title` text DEFAULT NULL, + `authorfullname` text DEFAULT NULL, + `authorshortname` text DEFAULT NULL, + `institute` text DEFAULT NULL, + `geneid` varchar(20) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `NewIndex4` (`geneid`), + FULLTEXT KEY `NewIndex1` (`institute`), + FULLTEXT KEY `NewIndex3` (`authorfullname`,`authorshortname`) +) ENGINE=MyISAM AUTO_INCREMENT=1401371 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `role` +-- + +DROP TABLE IF EXISTS `role`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `role` ( + `the_id` varchar(36) NOT NULL, + `name` varchar(80) NOT NULL, + `description` varchar(255) DEFAULT NULL, + PRIMARY KEY (`the_id`), + UNIQUE KEY `name` (`name`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `roles_users` +-- + +DROP TABLE IF EXISTS `roles_users`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `roles_users` ( + `user_id` int(11) DEFAULT NULL, + `role_id` int(11) DEFAULT NULL, + KEY `user_id` (`user_id`), + KEY `role_id` (`role_id`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `temporary` +-- + +DROP TABLE IF EXISTS `temporary`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `temporary` ( + `tax_id` varchar(20) DEFAULT NULL, + `GeneID` varchar(20) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `OMIM` varchar(100) DEFAULT NULL, + `HomoloGene` varchar(100) DEFAULT NULL, + `Other_GeneID` varchar(20) DEFAULT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `user` +-- + +DROP TABLE IF EXISTS `user`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `user` ( + `id` varchar(36) NOT NULL, + `email_address` varchar(50) NOT NULL, + `password` text NOT NULL, + `full_name` varchar(50) DEFAULT NULL, + `organization` varchar(50) DEFAULT NULL, + `active` tinyint(1) NOT NULL, + `registration_info` text DEFAULT NULL, + `confirmed` text DEFAULT NULL, + `superuser` text DEFAULT NULL, + PRIMARY KEY (`id`), + UNIQUE KEY `email_address` (`email_address`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `user_collection` +-- + +DROP TABLE IF EXISTS `user_collection`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `user_collection` ( + `id` varchar(36) NOT NULL, + `user` varchar(36) DEFAULT NULL, + `name` text DEFAULT NULL, + `created_timestamp` datetime /* mariadb-5.3 */ DEFAULT NULL, + `changed_timestamp` datetime /* mariadb-5.3 */ DEFAULT NULL, + `members` text DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `user` (`user`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `user_openids` +-- + +DROP TABLE IF EXISTS `user_openids`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `user_openids` ( + `openid_url` varchar(255) NOT NULL, + `user_id` varchar(36) NOT NULL, + PRIMARY KEY (`openid_url`), + KEY `user_id` (`user_id`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; +/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */; + +/*!40101 SET SQL_MODE=@OLD_SQL_MODE */; +/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */; +/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */; +/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */; +/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */; +/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */; +/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */; + +-- Dump completed on 2021-07-14 5:26:53 diff --git a/sql/schema.png b/sql/schema.png Binary files differnew file mode 100644 index 0000000..fbcf28c --- /dev/null +++ b/sql/schema.png diff --git a/sql/schema.sql b/sql/schema.sql new file mode 100644 index 0000000..c37754b --- /dev/null +++ b/sql/schema.sql @@ -0,0 +1,2406 @@ +-- This is a work-in-progress schema for the GeneNetwork database. The +-- GeneNetwork database has no foreign key constraint information. This schema +-- has them manually added. But, the work is not complete, and there may be +-- errors. A visualization of this schema can be found in schema.png and +-- schema.svg. + +-- MySQL dump 10.16 Distrib 10.1.41-MariaDB, for debian-linux-gnu (x86_64) +-- +-- Host: localhost Database: db_webqtl +-- ------------------------------------------------------ +-- Server version 10.5.8-MariaDB-log + +/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */; +/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */; +/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */; +/*!40101 SET NAMES utf8mb4 */; +/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */; +/*!40103 SET TIME_ZONE='+00:00' */; +/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */; +/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */; +/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */; +/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */; + +-- +-- Table structure for table `AccessLog` +-- + +DROP TABLE IF EXISTS `AccessLog`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `AccessLog` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `accesstime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00', + `ip_address` char(20) NOT NULL DEFAULT '0.0.0.0', + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=1366832 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `AvgMethod` +-- + +DROP TABLE IF EXISTS `AvgMethod`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `AvgMethod` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `AvgMethodId` int(5) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `Normalization` varchar(30) DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=28 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `BXDSnpPosition` +-- + +DROP TABLE IF EXISTS `BXDSnpPosition`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `BXDSnpPosition` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `Chr` char(2) DEFAULT NULL, + `StrainId1` int(11) DEFAULT NULL, + `StrainId2` int(11) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + PRIMARY KEY (`id`), + FOREIGN KEY (StrainId1) REFERENCES Strain(Id), + FOREIGN KEY (StrainId2) REFERENCES Strain(Id), + KEY `BXDSnpPosition` (`Chr`,`StrainId1`,`StrainId2`,`Mb`) +) ENGINE=MyISAM AUTO_INCREMENT=7791982 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CaseAttribute` +-- + +DROP TABLE IF EXISTS `CaseAttribute`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CaseAttribute` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(30) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=34 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CaseAttributeXRef` +-- + +DROP TABLE IF EXISTS `CaseAttributeXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CaseAttributeXRef` ( + `ProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `CaseAttributeId` smallint(5) NOT NULL DEFAULT 0, + `Value` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`ProbeSetFreezeId`,`StrainId`,`CaseAttributeId`), + FOREIGN KEY (ProbeSetFreezeId) REFERENCES ProbeSetFreeze(Id), + FOREIGN KEY (StrainId) REFERENCES Strain(Id), + FOREIGN KEY (CaseAttributeId) REFERENCES CaseAttribute(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CaseAttributeXRefNew` +-- + +DROP TABLE IF EXISTS `CaseAttributeXRefNew`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CaseAttributeXRefNew` ( + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` int(8) unsigned NOT NULL DEFAULT 0, + `CaseAttributeId` smallint(5) NOT NULL DEFAULT 0, + `Value` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`InbredSetId`,`StrainId`,`CaseAttributeId`), + FOREIGN KEY (InbredSetId) REFERENCES InbredSet(InbredSetId), + FOREIGN KEY (StrainId) REFERENCES Strain(Id), + FOREIGN KEY (CaseAttributeId) REFERENCES CaseAttribute(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `CeleraINFO_mm6` +-- + +DROP TABLE IF EXISTS `CeleraINFO_mm6`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `CeleraINFO_mm6` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `SNPID` char(14) NOT NULL DEFAULT '', + `chromosome` char(3) DEFAULT NULL, + `MB_UCSC` double DEFAULT NULL, + `MB_celera` double DEFAULT NULL, + `allele_B6` char(4) DEFAULT NULL, + `allele_D2` char(4) DEFAULT NULL, + `allele_AJ` char(4) DEFAULT NULL, + `B6_D2` char(1) DEFAULT NULL, + `B6_AJ` char(1) DEFAULT NULL, + `D2_AJ` char(1) DEFAULT NULL, + `MB_UCSC_OLD` double DEFAULT NULL, + `allele_S1` char(4) DEFAULT NULL, + `allele_X1` char(4) DEFAULT NULL, + `flanking5` char(100) DEFAULT NULL, + `flanking3` char(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `celeraIndex` (`chromosome`,`MB_celera`), + KEY `celeraIndex2` (`chromosome`,`MB_UCSC`), + KEY `chromosome_2` (`chromosome`,`MB_UCSC`), + KEY `MB_UCSC_2` (`MB_UCSC`,`chromosome`), + KEY `SNPID` (`SNPID`) +) ENGINE=MyISAM AUTO_INCREMENT=3028848 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Chr_Length` +-- + +DROP TABLE IF EXISTS `Chr_Length`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Chr_Length` ( + `Name` char(3) NOT NULL DEFAULT '', + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, + `OrderId` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Length` int(10) unsigned NOT NULL DEFAULT 0, + `Length_2016` int(10) unsigned NOT NULL DEFAULT 0, + `Length_mm8` int(10) unsigned DEFAULT NULL, + UNIQUE KEY `nameIdx` (`SpeciesId`,`Name`), + UNIQUE KEY `SpeciesIdx` (`SpeciesId`,`OrderId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DBList` +-- + +DROP TABLE IF EXISTS `DBList`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DBList` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `DBTypeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `FreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` char(50) NOT NULL DEFAULT '', + `Code` char(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Cde` (`Code`), + FOREIGN KEY (DBTypeId) REFERENCES DBType(Id), + KEY `DBIndex` (`DBTypeId`,`FreezeId`) +) ENGINE=MyISAM AUTO_INCREMENT=907 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DBType` +-- + +DROP TABLE IF EXISTS `DBType`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DBType` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` char(30) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DatasetMapInvestigator` +-- + +DROP TABLE IF EXISTS `DatasetMapInvestigator`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DatasetMapInvestigator` ( + `Id` mediumint(9) NOT NULL AUTO_INCREMENT, + `DatasetId` int(6) NOT NULL, + `InvestigatorId` int(6) NOT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=2403 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `DatasetStatus` +-- + +DROP TABLE IF EXISTS `DatasetStatus`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `DatasetStatus` ( + `DatasetStatusId` int(5) NOT NULL, + `DatasetStatusName` varchar(20) DEFAULT NULL, + UNIQUE KEY `DatasetStatusId` (`DatasetStatusId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Dataset_mbat` +-- + +DROP TABLE IF EXISTS `Dataset_mbat`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Dataset_mbat` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `switch` int(1) DEFAULT NULL, + `species` varchar(255) DEFAULT NULL, + `cross` varchar(255) DEFAULT NULL, + `tissue` varchar(255) DEFAULT NULL, + `database` varchar(255) DEFAULT NULL, + `database_LongName` varchar(255) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=16 DEFAULT CHARSET=utf8; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Datasets` +-- + +DROP TABLE IF EXISTS `Datasets`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Datasets` ( + `DatasetId` int(6) NOT NULL AUTO_INCREMENT, + `DatasetName` varchar(255) DEFAULT NULL, + `GeoSeries` varchar(30) DEFAULT NULL, + `PublicationTitle` longtext DEFAULT NULL, + `Summary` longtext DEFAULT NULL, + `ExperimentDesign` longtext DEFAULT NULL, + `AboutCases` longtext DEFAULT NULL, + `AboutTissue` longtext DEFAULT NULL, + `AboutPlatform` longtext DEFAULT NULL, + `AboutDataProcessing` longtext DEFAULT NULL, + `Contributors` longtext DEFAULT NULL, + `Citation` longtext DEFAULT NULL, + `Acknowledgment` longtext DEFAULT NULL, + `Notes` longtext DEFAULT NULL, + `InvestigatorId` int(5) NOT NULL, + `DatasetStatusId` int(5) NOT NULL, + PRIMARY KEY (`DatasetId`), + UNIQUE KEY `DatasetId` (`DatasetId`) +) ENGINE=MyISAM AUTO_INCREMENT=301 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Docs` +-- + +DROP TABLE IF EXISTS `Docs`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Docs` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `entry` varchar(255) NOT NULL, + `title` varchar(255) NOT NULL, + `content` text NOT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=10 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `EnsemblChip` +-- + +DROP TABLE IF EXISTS `EnsemblChip`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `EnsemblChip` ( + `Id` int(11) NOT NULL, + `ProbeSetSize` int(11) NOT NULL, + `Name` varchar(40) NOT NULL, + `Type` enum('AFFY','OLIGO') DEFAULT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `EnsemblProbe` +-- + +DROP TABLE IF EXISTS `EnsemblProbe`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `EnsemblProbe` ( + `Id` int(11) NOT NULL, + `ChipId` int(11) NOT NULL, + `ProbeSet` varchar(40) DEFAULT NULL, + `Name` varchar(40) DEFAULT NULL, + `length` int(11) NOT NULL, + KEY `EnsemblProbeId` (`Id`), + KEY `EnsemblProbeName` (`Name`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `EnsemblProbeLocation` +-- + +DROP TABLE IF EXISTS `EnsemblProbeLocation`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `EnsemblProbeLocation` ( + `Chr` char(2) NOT NULL, + `Start` int(11) NOT NULL, + `Start_2016` int(11) DEFAULT NULL, + `End` int(11) NOT NULL, + `End_2016` int(11) DEFAULT NULL, + `Strand` int(11) NOT NULL, + `MisMataches` int(11) DEFAULT NULL, + `ProbeId` int(11) NOT NULL, + KEY `EnsemblLocationProbeId` (`ProbeId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GORef` +-- + +DROP TABLE IF EXISTS `GORef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GORef` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `goterm` varchar(255) DEFAULT NULL, + `genes` text DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=17510 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Genbank` +-- + +DROP TABLE IF EXISTS `Genbank`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Genbank` ( + `Id` varchar(20) NOT NULL DEFAULT '', + `Sequence` text DEFAULT NULL, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, + PRIMARY KEY (`Id`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `Id` (`Id`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneCategory` +-- + +DROP TABLE IF EXISTS `GeneCategory`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneCategory` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` char(255) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`), + KEY `name_idx` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=22 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneChip` +-- + +DROP TABLE IF EXISTS `GeneChip`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneChip` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `GeneChipId` int(5) DEFAULT NULL, + `GeneChipName` varchar(200) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `GeoPlatform` char(15) DEFAULT NULL, + `Title` varchar(100) DEFAULT NULL, + `SpeciesId` int(5) DEFAULT 1, + `GO_tree_value` varchar(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId) +) ENGINE=MyISAM AUTO_INCREMENT=67 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneChipEnsemblXRef` +-- + +DROP TABLE IF EXISTS `GeneChipEnsemblXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneChipEnsemblXRef` ( + `GeneChipId` int(11) NOT NULL, + `EnsemblChipId` int(11) NOT NULL, + FOREIGN KEY (GeneChipId) REFERENCES GeneChip(GeneChipId), + FOREIGN KEY (EnsemblChipId) REFERENCES EnsemblChip(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneIDXRef` +-- + +DROP TABLE IF EXISTS `GeneIDXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneIDXRef` ( + `mouse` int(11) NOT NULL DEFAULT 0, + `rat` int(11) NOT NULL DEFAULT 0, + `human` int(11) NOT NULL DEFAULT 0, + KEY `mouse_index` (`mouse`), + KEY `rat_index` (`rat`), + KEY `human_index` (`human`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneList` +-- + +DROP TABLE IF EXISTS `GeneList`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneList` ( + `SpeciesId` int(5) unsigned NOT NULL DEFAULT 1, + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `GeneSymbol` varchar(15) DEFAULT NULL, + `GeneDescription` text DEFAULT NULL, + `Chromosome` varchar(10) DEFAULT NULL, + `TxStart` double DEFAULT NULL, + `TxStart_2016` double DEFAULT NULL, + `TxEnd` double DEFAULT NULL, + `TxEnd_2016` double DEFAULT NULL, + `Strand` char(1) DEFAULT NULL, + `GeneID` varchar(10) DEFAULT NULL, + `NM_ID` varchar(15) DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + `GenBankID` varchar(15) DEFAULT NULL, + `UnigenID` varchar(15) DEFAULT NULL, + `ProteinID` varchar(15) DEFAULT NULL, + `AlignID` varchar(10) DEFAULT NULL, + `exonCount` int(7) NOT NULL DEFAULT 0, + `exonStarts` text DEFAULT NULL, + `exonEnds` text DEFAULT NULL, + `cdsStart` double DEFAULT NULL, + `cdsStart_2016` double DEFAULT NULL, + `cdsEnd` double DEFAULT NULL, + `cdsEnd_2016` double DEFAULT NULL, + `TxStart_mm8` double DEFAULT NULL, + `TxEnd_mm8` double DEFAULT NULL, + `Strand_mm8` char(1) DEFAULT NULL, + `exonCount_mm8` int(7) DEFAULT NULL, + `exonStarts_mm8` text DEFAULT NULL, + `exonEnds_mm8` text DEFAULT NULL, + `cdsStart_mm8` double DEFAULT NULL, + `cdsEnd_mm8` double DEFAULT NULL, + `Chromosome_mm8` varchar(10) DEFAULT NULL, + `Info_mm9` text DEFAULT NULL, + `RGD_ID` int(10) DEFAULT NULL, + UNIQUE KEY `geneId` (`SpeciesId`,`Id`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + FOREIGN KEY (GenBankID) REFERENCES Genbank(Id), + KEY `geneSymbol` (`GeneSymbol`), + KEY `geneSymbol2` (`SpeciesId`,`GeneSymbol`), + KEY `Loc1` (`SpeciesId`,`Chromosome`,`TxStart`), + KEY `Loc2` (`SpeciesId`,`Chromosome`,`TxEnd`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneList_rn3` +-- + +DROP TABLE IF EXISTS `GeneList_rn3`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneList_rn3` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `ProbeSet` varchar(16) DEFAULT NULL, + `geneSymbol` varchar(15) DEFAULT NULL, + `geneID` varchar(10) DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + `geneDescription` text DEFAULT NULL, + `genBankID` varchar(15) DEFAULT NULL, + `unigenID` varchar(15) DEFAULT NULL, + `score` int(4) DEFAULT NULL, + `qStart` int(3) DEFAULT NULL, + `qEnd` int(3) DEFAULT NULL, + `qSize` int(3) DEFAULT NULL, + `identity` varchar(7) DEFAULT NULL, + `chromosome` varchar(8) DEFAULT NULL, + `strand` char(1) DEFAULT NULL, + `txStart` double DEFAULT NULL, + `txEnd` double DEFAULT NULL, + `txSize` double DEFAULT NULL, + `span` int(7) DEFAULT NULL, + `specificity` double DEFAULT NULL, + `sequence` text DEFAULT NULL, + `flag` int(1) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `geneSymbol` (`geneSymbol`), + KEY `Loc1` (`chromosome`,`txStart`), + KEY `Loc2` (`chromosome`,`txEnd`) +) ENGINE=MyISAM AUTO_INCREMENT=14917 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneList_rn33` +-- + +DROP TABLE IF EXISTS `GeneList_rn33`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneList_rn33` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `geneSymbol` varchar(15) DEFAULT NULL, + `txStart` double DEFAULT NULL, + `txEnd` double DEFAULT NULL, + `exonCount` int(7) DEFAULT NULL, + `NM_ID` varchar(15) DEFAULT NULL, + `chromosome` varchar(8) DEFAULT NULL, + `strand` char(1) DEFAULT NULL, + `cdsStart` double DEFAULT NULL, + `cdsEnd` double DEFAULT NULL, + `exonStarts` text DEFAULT NULL, + `exonEnds` text DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `geneSymbol` (`geneSymbol`), + KEY `Loc1` (`chromosome`,`txStart`), + KEY `Loc2` (`chromosome`,`txEnd`) +) ENGINE=MyISAM AUTO_INCREMENT=9790 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneMap_cuiyan` +-- + +DROP TABLE IF EXISTS `GeneMap_cuiyan`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneMap_cuiyan` ( + `id` bigint(20) NOT NULL AUTO_INCREMENT, + `TranscriptID` varchar(255) DEFAULT NULL, + `GeneID` varchar(255) DEFAULT NULL, + `Symbol` varchar(255) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=10537 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneRIF` +-- + +DROP TABLE IF EXISTS `GeneRIF`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneRIF` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `versionId` smallint(5) unsigned NOT NULL DEFAULT 0, + `symbol` varchar(30) NOT NULL DEFAULT '', + `PubMed_ID` varchar(255) DEFAULT NULL, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 1, + `comment` text DEFAULT NULL, + `email` varchar(50) DEFAULT NULL, + `createtime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00', + `user_ip` varchar(20) DEFAULT NULL, + `weburl` varchar(255) DEFAULT NULL, + `initial` varchar(10) DEFAULT NULL, + `display` tinyint(4) DEFAULT 1, + `reason` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`,`versionId`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `name_idx` (`symbol`), + KEY `status` (`display`), + KEY `timestamp` (`createtime`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneRIFXRef` +-- + +DROP TABLE IF EXISTS `GeneRIFXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneRIFXRef` ( + `GeneRIFId` int(10) unsigned NOT NULL DEFAULT 0, + `versionId` smallint(5) unsigned NOT NULL DEFAULT 0, + `GeneCategoryId` smallint(5) unsigned NOT NULL DEFAULT 0, + PRIMARY KEY (`GeneRIFId`,`versionId`,`GeneCategoryId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GeneRIF_BASIC` +-- + +DROP TABLE IF EXISTS `GeneRIF_BASIC`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GeneRIF_BASIC` ( + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 1, + `GeneId` int(10) unsigned NOT NULL DEFAULT 0, + `symbol` varchar(255) NOT NULL DEFAULT '', + `PubMed_ID` int(10) unsigned NOT NULL DEFAULT 0, + `createtime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00', + `comment` text DEFAULT NULL, + `VersionId` tinyint(3) unsigned NOT NULL AUTO_INCREMENT, + PRIMARY KEY (`GeneId`,`SpeciesId`,`createtime`,`PubMed_ID`,`VersionId`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `symbol` (`symbol`,`SpeciesId`,`createtime`), + FULLTEXT KEY `commts` (`comment`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Geno` +-- + +DROP TABLE IF EXISTS `Geno`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Geno` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 1, + `Name` varchar(40) NOT NULL DEFAULT '', + `Marker_Name` varchar(40) DEFAULT NULL, + `Chr` char(3) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + `Sequence` text DEFAULT NULL, + `Source` varchar(40) DEFAULT NULL, + `chr_num` smallint(5) unsigned DEFAULT NULL, + `Source2` varchar(40) DEFAULT NULL, + `Comments` varchar(255) DEFAULT NULL, + `used_by_geno_file` varchar(40) DEFAULT NULL, + `Mb_mm8` double DEFAULT NULL, + `Chr_mm8` char(3) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `species_name` (`SpeciesId`,`Name`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=716770 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoCode` +-- + +DROP TABLE IF EXISTS `GenoCode`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoCode` ( + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 1, + `AlleleType` char(3) NOT NULL DEFAULT '', + `AlleleSymbol` char(2) NOT NULL DEFAULT '', + `DatabaseValue` smallint(5) DEFAULT NULL, + PRIMARY KEY (`InbredSetId`,`AlleleType`,`AlleleSymbol`), + UNIQUE KEY `InbredSetId_AlleleType` (`InbredSetId`,`AlleleType`), + UNIQUE KEY `InbredSetId_AlleleSymbol` (`InbredSetId`,`AlleleSymbol`), + UNIQUE KEY `InbredSetId_DatabaseValue` (`InbredSetId`,`DatabaseValue`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoData` +-- + +DROP TABLE IF EXISTS `GenoData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoFile` +-- + +DROP TABLE IF EXISTS `GenoFile`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoFile` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `server` varchar(100) NOT NULL, + `InbredSetID` int(11) NOT NULL, + `location` varchar(255) NOT NULL, + `title` varchar(255) NOT NULL, + `sort` int(3) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=5 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoFreeze` +-- + +DROP TABLE IF EXISTS `GenoFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '2001-01-01', + `public` tinyint(4) NOT NULL DEFAULT 0, + `InbredSetId` smallint(5) unsigned DEFAULT 1, + `confidentiality` tinyint(3) unsigned DEFAULT 0, + `AuthorisedUsers` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + FOREIGN KEY (InbredSetId) REFERENCES InbredSet(InbredSetId), +) ENGINE=MyISAM AUTO_INCREMENT=37 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoSE` +-- + +DROP TABLE IF EXISTS `GenoSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `GenoXRef` +-- + +DROP TABLE IF EXISTS `GenoXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `GenoXRef` ( + `GenoFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `GenoId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `cM` double DEFAULT 0, + `Used_for_mapping` char(1) DEFAULT 'N', + UNIQUE KEY `ProbeSetId` (`GenoFreezeId`,`GenoId`), + UNIQUE KEY `DataId` (`DataId`), + FOREIGN KEY (GenoFreezeId) REFERENCES GenoFreeze(Id), + FOREIGN KEY (GenoId) REFERENCES Geno(Id), + KEY `GenoId` (`GenoId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `H2` +-- + +DROP TABLE IF EXISTS `H2`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `H2` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `ICH2` double NOT NULL DEFAULT 0, + `H2SE` double NOT NULL DEFAULT 0, + `HPH2` double NOT NULL DEFAULT 0, + UNIQUE KEY `DataId` (`DataId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Homologene` +-- + +DROP TABLE IF EXISTS `Homologene`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Homologene` ( + `HomologeneId` int(11) DEFAULT NULL, + `GeneId` int(11) DEFAULT NULL, + `TaxonomyId` int(11) DEFAULT NULL, + KEY `GeneId` (`GeneId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `InbredSet` +-- + +DROP TABLE IF EXISTS `InbredSet`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `InbredSet` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `InbredSetId` int(5) DEFAULT NULL, + `InbredSetName` varchar(100) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `SpeciesId` smallint(5) unsigned DEFAULT 1, + `FullName` varchar(100) DEFAULT NULL, + `public` tinyint(3) unsigned DEFAULT 2, + `MappingMethodId` char(50) DEFAULT '1', + `GeneticType` varchar(255) DEFAULT NULL, + `Family` varchar(100) DEFAULT NULL, + `FamilyOrder` int(5) DEFAULT NULL, + `MenuOrderId` double NOT NULL, + `InbredSetCode` varchar(5) DEFAULT NULL, + PRIMARY KEY (`Id`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + FOREIGN KEY (MappingMethodId) REFERENCES MappingMethod(Id), + KEY `Name` (`Name`), + KEY `SpeciesId` (`SpeciesId`), + KEY `Id` (`Id`), + KEY `InbredSetCode` (`InbredSetCode`) +) ENGINE=MyISAM AUTO_INCREMENT=83 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `IndelAll` +-- + +DROP TABLE IF EXISTS `IndelAll`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `IndelAll` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` smallint(5) unsigned DEFAULT 1, + `SourceId` smallint(5) unsigned DEFAULT NULL, + `Name` char(30) DEFAULT NULL, + `Chromosome` char(2) DEFAULT NULL, + `Mb_start` double DEFAULT NULL, + `Mb_start_2016` double DEFAULT NULL, + `Strand` char(1) DEFAULT NULL, + `Type` char(15) DEFAULT NULL, + `Mb_end` double DEFAULT NULL, + `Mb_end_2016` double DEFAULT NULL, + `Size` double DEFAULT NULL, + `InDelSequence` char(30) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `SnpId` (`SpeciesId`,`Name`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `SnpId2` (`Name`), + KEY `Position` (`SpeciesId`,`Chromosome`,`Mb_start`) USING BTREE +) ENGINE=MyISAM AUTO_INCREMENT=142895 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `IndelXRef` +-- + +DROP TABLE IF EXISTS `IndelXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `IndelXRef` ( + `IndelId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId1` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId2` smallint(5) unsigned DEFAULT NULL, + PRIMARY KEY (`IndelId`,`StrainId1`), + FOREIGN KEY (IndelId) REFERENCES IndelAll(Id), + FOREIGN KEY (StrainId1) REFERENCES Strain(Id), + FOREIGN KEY (StrainId2) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `InfoFiles` +-- + +DROP TABLE IF EXISTS `InfoFiles`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `InfoFiles` ( + `DatasetId` int(5) DEFAULT NULL, + `SpeciesId` int(5) DEFAULT NULL, + `TissueId` int(5) DEFAULT NULL, + `InbredSetId` int(5) DEFAULT NULL, + `GeneChipId` int(5) DEFAULT NULL, + `AvgMethodId` int(5) DEFAULT NULL, + `InfoFileTitle` longtext DEFAULT NULL, + `Specifics` longtext DEFAULT NULL, + `Status` varchar(255) DEFAULT NULL, + `Title` varchar(255) DEFAULT NULL, + `Organism` varchar(255) DEFAULT NULL, + `Experiment_Type` longtext DEFAULT NULL, + `Summary` longtext DEFAULT NULL, + `Overall_Design` longtext DEFAULT NULL, + `Contributor` longtext DEFAULT NULL, + `Citation` longtext DEFAULT NULL, + `Submission_Date` varchar(255) DEFAULT NULL, + `Contact_Name` varchar(255) DEFAULT NULL, + `Emails` varchar(255) DEFAULT NULL, + `Phone` varchar(255) DEFAULT NULL, + `URL` varchar(255) DEFAULT NULL, + `Organization_Name` varchar(255) DEFAULT NULL, + `Department` varchar(255) DEFAULT NULL, + `Laboratory` varchar(255) DEFAULT NULL, + `Street` varchar(255) DEFAULT NULL, + `City` varchar(255) DEFAULT NULL, + `State` varchar(255) DEFAULT NULL, + `ZIP` varchar(255) DEFAULT NULL, + `Country` varchar(255) DEFAULT NULL, + `Platforms` varchar(255) DEFAULT NULL, + `Samples` longtext DEFAULT NULL, + `Species` varchar(255) DEFAULT NULL, + `Normalization` varchar(255) DEFAULT NULL, + `InbredSet` varchar(255) DEFAULT NULL, + `InfoPageName` varchar(255) NOT NULL, + `DB_Name` varchar(255) DEFAULT NULL, + `Organism_Id` varchar(60) DEFAULT NULL, + `InfoPageTitle` varchar(255) DEFAULT NULL, + `GN_AccesionId` int(4) DEFAULT NULL, + `Tissue` varchar(60) DEFAULT NULL, + `AuthorizedUsers` varchar(100) DEFAULT NULL, + `About_Cases` longtext DEFAULT NULL, + `About_Tissue` longtext DEFAULT NULL, + `About_Download` longtext DEFAULT NULL, + `About_Array_Platform` longtext DEFAULT NULL, + `About_Data_Values_Processing` longtext DEFAULT NULL, + `Data_Source_Acknowledge` longtext DEFAULT NULL, + `Progreso` varchar(20) DEFAULT NULL, + `QualityControlStatus` longtext DEFAULT NULL, + `InfoFileId` int(6) NOT NULL AUTO_INCREMENT, + PRIMARY KEY (`InfoFileId`), + UNIQUE KEY `InfoPageName` (`InfoPageName`), + UNIQUE KEY `GN_AccesionId` (`GN_AccesionId`) +) ENGINE=MyISAM AUTO_INCREMENT=1470 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `InfoFilesUser_md5` +-- + +DROP TABLE IF EXISTS `InfoFilesUser_md5`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `InfoFilesUser_md5` ( + `Username` varchar(16) DEFAULT NULL, + `Password` varchar(32) DEFAULT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Investigators` +-- + +DROP TABLE IF EXISTS `Investigators`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Investigators` ( + `FirstName` varchar(20) DEFAULT NULL, + `LastName` varchar(20) DEFAULT NULL, + `Address` varchar(200) DEFAULT NULL, + `City` varchar(20) DEFAULT NULL, + `State` varchar(20) DEFAULT NULL, + `ZipCode` varchar(20) DEFAULT NULL, + `Phone` varchar(200) DEFAULT NULL, + `Email` varchar(200) DEFAULT NULL, + `Country` varchar(35) DEFAULT NULL, + `Url` text DEFAULT NULL, + `UserName` varchar(30) DEFAULT NULL, + `UserPass` varchar(50) DEFAULT NULL, + `UserDate` datetime DEFAULT NULL, + `UserLevel` int(8) DEFAULT NULL, + `OrganizationId` int(5) NOT NULL, + `InvestigatorId` int(5) NOT NULL AUTO_INCREMENT, + PRIMARY KEY (`InvestigatorId`), + FOREIGN KEY (OrganizationId) REFERENCES Organizations(OrganizationId) +) ENGINE=MyISAM AUTO_INCREMENT=151 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `LCorrRamin3` +-- + +DROP TABLE IF EXISTS `LCorrRamin3`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `LCorrRamin3` ( + `GeneId1` int(12) unsigned DEFAULT NULL, + `GeneId2` int(12) unsigned DEFAULT NULL, + `value` double DEFAULT NULL, + KEY `GeneId1` (`GeneId1`), + KEY `GeneId2` (`GeneId2`), + KEY `GeneId1_2` (`GeneId1`,`GeneId2`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `MachineAccessLog` +-- + +DROP TABLE IF EXISTS `MachineAccessLog`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `MachineAccessLog` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `accesstime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00', + `ip_address` char(20) NOT NULL DEFAULT '0.0.0.0', + `db_id` tinyint(3) unsigned NOT NULL DEFAULT 0, + `data_id` int(10) unsigned DEFAULT NULL, + `action` char(10) DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=514946 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `MappingMethod` +-- + +DROP TABLE IF EXISTS `MappingMethod`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `MappingMethod` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) NOT NULL DEFAULT '', + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=6 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `NStrain` +-- + +DROP TABLE IF EXISTS `NStrain`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `NStrain` ( + `DataId` int(10) unsigned DEFAULT NULL, + `StrainId` smallint(5) unsigned DEFAULT NULL, + `count` varchar(5) DEFAULT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `News` +-- + +DROP TABLE IF EXISTS `News`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `News` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `date` date DEFAULT NULL, + `details` text DEFAULT NULL, + PRIMARY KEY (`id`) +) ENGINE=MyISAM AUTO_INCREMENT=296 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Organizations` +-- + +DROP TABLE IF EXISTS `Organizations`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Organizations` ( + `OrganizationId` int(5) NOT NULL AUTO_INCREMENT, + `OrganizationName` varchar(200) NOT NULL, + PRIMARY KEY (`OrganizationId`), + UNIQUE KEY `OrganizationId` (`OrganizationId`), + UNIQUE KEY `OrganizationName` (`OrganizationName`) +) ENGINE=MyISAM AUTO_INCREMENT=92 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Phenotype` +-- + +DROP TABLE IF EXISTS `Phenotype`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Phenotype` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Pre_publication_description` text DEFAULT NULL, + `Post_publication_description` text DEFAULT NULL, + `Original_description` text DEFAULT NULL, + `Units` varchar(100) NOT NULL DEFAULT 'Unknown', + `Pre_publication_abbreviation` varchar(40) DEFAULT NULL, + `Post_publication_abbreviation` varchar(40) DEFAULT NULL, + `Lab_code` varchar(255) DEFAULT NULL, + `Submitter` varchar(255) DEFAULT NULL, + `Owner` varchar(255) DEFAULT NULL, + `Authorized_Users` varchar(255) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `Post_publication_description_Index` (`Post_publication_description`(255)), + KEY `Pre_publication_description_Index` (`Pre_publication_description`(255)), + KEY `Pre_publication_abbreviation_Index` (`Pre_publication_abbreviation`), + KEY `Post_publication_abbreviation_Index` (`Post_publication_abbreviation`), + KEY `Lab_code` (`Lab_code`), + FULLTEXT KEY `Post_publication_description` (`Post_publication_description`), + FULLTEXT KEY `Pre_publication_description` (`Pre_publication_description`), + FULLTEXT KEY `Pre_publication_abbreviation` (`Pre_publication_abbreviation`), + FULLTEXT KEY `Post_publication_abbreviation` (`Post_publication_abbreviation`), + FULLTEXT KEY `Lab_code1` (`Lab_code`), + FULLTEXT KEY `SEARCH_FULL_IDX` (`Post_publication_description`,`Pre_publication_description`,`Pre_publication_abbreviation`,`Post_publication_abbreviation`,`Lab_code`) +) ENGINE=MyISAM AUTO_INCREMENT=29299 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Probe` +-- + +DROP TABLE IF EXISTS `Probe`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Probe` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `ProbeSetId` int(10) unsigned NOT NULL DEFAULT 0, + `Name` char(20) DEFAULT NULL, + `Sequence` char(30) DEFAULT NULL, + `ExonNo` char(7) DEFAULT NULL, + `SerialOrder` double DEFAULT NULL, + `Tm` double DEFAULT NULL, + `E_GSB` double DEFAULT NULL, + `E_NSB` double DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `ProbeSetId` (`ProbeSetId`,`Name`), + FOREIGN KEY (ProbeSetId) REFERENCES ProbeSet(ProbeSetId), + KEY `SerialOrder` (`ProbeSetId`,`SerialOrder`) +) ENGINE=MyISAM AUTO_INCREMENT=19054073 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeData` +-- + +DROP TABLE IF EXISTS `ProbeData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeFreeze` +-- + +DROP TABLE IF EXISTS `ProbeFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `ProbeFreezeId` int(5) DEFAULT NULL, + `ChipId` smallint(5) unsigned NOT NULL DEFAULT 0, + `TissueId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `InbredSetId` smallint(5) unsigned DEFAULT 1, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`), + FOREIGN KEY (TissueId) REFERENCES Tissue(TissueId), + KEY `TissueId` (`TissueId`), + KEY `InbredSetId` (`InbredSetId`) +) ENGINE=MyISAM AUTO_INCREMENT=416 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeH2` +-- + +DROP TABLE IF EXISTS `ProbeH2`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeH2` ( + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeId` int(10) unsigned NOT NULL DEFAULT 0, + `h2` double DEFAULT NULL, + `weight` double DEFAULT NULL, + UNIQUE KEY `ProbeId` (`ProbeFreezeId`,`ProbeId`), + FOREIGN KEY (ProbeFreezeId) REFERENCES ProbeFreeze(ProbeFreezeId), + FOREIGN KEY (ProbeId) REFERENCES Probe(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSE` +-- + +DROP TABLE IF EXISTS `ProbeSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSet` +-- + +DROP TABLE IF EXISTS `ProbeSet`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSet` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `ChipId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(100) DEFAULT NULL, + `TargetId` varchar(150) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `description` longtext DEFAULT NULL, + `Chr` char(3) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Chr_2016` char(3) DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + `alias` longtext DEFAULT NULL, + `GeneId` varchar(20) DEFAULT NULL, + `GenbankId` varchar(1000) DEFAULT NULL, + `SNP` int(2) DEFAULT NULL, + `BlatSeq` text NOT NULL, + `TargetSeq` text DEFAULT NULL, + `UniGeneId` varchar(100) DEFAULT NULL, + `Strand_Probe` char(1) DEFAULT NULL, + `Strand_Gene` char(1) DEFAULT NULL, + `OMIM` varchar(20) DEFAULT NULL, + `comments` text NOT NULL, + `Probe_set_target_region` varchar(255) DEFAULT NULL, + `Probe_set_specificity` double DEFAULT NULL, + `Probe_set_BLAT_score` double DEFAULT NULL, + `Probe_set_Blat_Mb_start` double DEFAULT NULL, + `Probe_set_Blat_Mb_end` double DEFAULT NULL, + `Probe_set_Blat_Mb_start_2016` double DEFAULT NULL, + `Probe_set_Blat_Mb_end_2016` double DEFAULT NULL, + `Probe_set_strand` varchar(255) DEFAULT NULL, + `Probe_set_Note_by_RW` varchar(255) DEFAULT NULL, + `flag` char(1) DEFAULT NULL, + `Symbol_H` varchar(100) DEFAULT NULL, + `description_H` varchar(255) DEFAULT NULL, + `chromosome_H` char(3) DEFAULT NULL, + `MB_H` double DEFAULT NULL, + `alias_H` varchar(255) DEFAULT NULL, + `GeneId_H` varchar(20) DEFAULT NULL, + `chr_num` smallint(5) unsigned DEFAULT 30, + `name_num` int(10) unsigned DEFAULT 4294967290, + `Probe_Target_Description` varchar(225) DEFAULT NULL, + `RefSeq_TranscriptId` varchar(255) DEFAULT NULL, + `ENSEMBLGeneId` varchar(50) DEFAULT NULL, + `Chr_mm8` char(3) DEFAULT NULL, + `Mb_mm8` double DEFAULT NULL, + `Probe_set_Blat_Mb_start_mm8` double DEFAULT NULL, + `Probe_set_Blat_Mb_end_mm8` double DEFAULT NULL, + `HomoloGeneID` varchar(20) DEFAULT NULL, + `Biotype_ENS` varchar(255) DEFAULT NULL, + `ProteinID` varchar(50) DEFAULT NULL, + `ProteinName` varchar(50) DEFAULT NULL, + `UniProtID` varchar(20) DEFAULT NULL, + `Flybase_Id` varchar(25) DEFAULT NULL, + `RGD_ID` int(10) DEFAULT NULL, + `HMDB_ID` varchar(255) DEFAULT NULL, + `Confidence` int(5) DEFAULT NULL, + `ChEBI_ID` int(10) DEFAULT NULL, + `ChEMBL_ID` varchar(100) DEFAULT NULL, + `CAS_number` varchar(100) DEFAULT NULL, + `PubChem_ID` int(10) DEFAULT NULL, + `ChemSpider_ID` int(10) DEFAULT NULL, + `UNII_ID` varchar(100) DEFAULT NULL, + `EC_number` varchar(100) DEFAULT NULL, + `KEGG_ID` varchar(100) DEFAULT NULL, + `Molecular_Weight` double DEFAULT NULL, + `Nugowiki_ID` int(10) DEFAULT NULL, + `Type` varchar(255) DEFAULT NULL, + `Tissue` varchar(255) DEFAULT NULL, + `PrimaryName` varchar(255) DEFAULT NULL, + `SecondaryNames` longtext DEFAULT NULL, + `PeptideSequence` varchar(20) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `ProbeSetId` (`ChipId`,`Name`), + FOREIGN KEY (HomoloGeneID) REFERENCES Homologene(HomologeneId), + KEY `Name_IDX` (`Name`), + KEY `symbol_IDX` (`Symbol`), + KEY `RefSeq_TranscriptId` (`RefSeq_TranscriptId`), + KEY `GENBANK_IDX` (`GenbankId`), + KEY `TargetId` (`TargetId`), + KEY `Position` (`Chr`), + KEY `GeneId_IDX` (`GeneId`), + FULLTEXT KEY `SEARCH_GENE_IDX` (`Symbol`,`alias`), + FULLTEXT KEY `SEARCH_FULL_IDX` (`Name`,`description`,`Symbol`,`alias`,`GenbankId`,`UniGeneId`,`Probe_Target_Description`), + FULLTEXT KEY `RefSeq_FULL_IDX` (`RefSeq_TranscriptId`) +) ENGINE=MyISAM AUTO_INCREMENT=12118724 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetData` +-- + +DROP TABLE IF EXISTS `ProbeSetData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetFreeze` +-- + +DROP TABLE IF EXISTS `ProbeSetFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `AvgID` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(40) DEFAULT NULL, + `Name2` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `OrderList` int(5) DEFAULT NULL, + `public` tinyint(4) NOT NULL DEFAULT 0, + `confidentiality` tinyint(4) NOT NULL DEFAULT 0, + `AuthorisedUsers` varchar(300) NOT NULL, + `DataScale` varchar(20) NOT NULL DEFAULT 'log2', + PRIMARY KEY (`Id`), + UNIQUE KEY `FullName` (`FullName`), + UNIQUE KEY `Name` (`Name`), + FOREIGN KEY (ProbeFreezeId) REFERENCES ProbeFreeze(ProbeFreezeId), + KEY `NameIndex` (`Name2`), + KEY `ShortName` (`ShortName`), + KEY `ProbeFreezeId` (`ProbeFreezeId`), + KEY `conf_and_public` (`confidentiality`,`public`) +) ENGINE=MyISAM AUTO_INCREMENT=1006 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetSE` +-- + +DROP TABLE IF EXISTS `ProbeSetSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeSetXRef` +-- + +DROP TABLE IF EXISTS `ProbeSetXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeSetXRef` ( + `ProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeSetId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `Locus_old` char(20) DEFAULT NULL, + `LRS_old` double DEFAULT NULL, + `pValue_old` double DEFAULT NULL, + `mean` double DEFAULT NULL, + `se` double DEFAULT NULL, + `Locus` char(20) DEFAULT NULL, + `LRS` double DEFAULT NULL, + `pValue` double DEFAULT NULL, + `additive` double DEFAULT NULL, + `h2` float DEFAULT NULL, + UNIQUE KEY `ProbeSetId` (`ProbeSetFreezeId`,`ProbeSetId`), + UNIQUE KEY `DataId_IDX` (`DataId`), + FOREIGN KEY (ProbeSetFreezeId) REFERENCES ProbeSetFreeze(Id), + FOREIGN KEY (ProbeSetId) REFERENCES ProbeSet(Id), + KEY `ProbeSetId1` (`ProbeSetId`), + KEY `Locus` (`Locus`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `ProbeXRef` +-- + +DROP TABLE IF EXISTS `ProbeXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `ProbeXRef` ( + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + UNIQUE KEY `ProbeId` (`ProbeFreezeId`,`ProbeId`), + UNIQUE KEY `DataId_IDX` (`DataId`), + FOREIGN KEY (ProbeFreezeId) REFERENCES ProbeFreeze(ProbeFreezeId), + FOREIGN KEY (ProbeId) REFERENCES Probe(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Publication` +-- + +DROP TABLE IF EXISTS `Publication`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Publication` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `PubMed_ID` int(10) unsigned DEFAULT NULL, + `Abstract` text DEFAULT NULL, + `Authors` text NOT NULL, + `Title` varchar(255) DEFAULT NULL, + `Journal` varchar(255) DEFAULT NULL, + `Volume` varchar(255) DEFAULT NULL, + `Pages` varchar(255) DEFAULT NULL, + `Month` varchar(255) DEFAULT NULL, + `Year` varchar(255) NOT NULL DEFAULT '0', + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`PubMed_ID`), + KEY `PubMed_ID` (`PubMed_ID`), + FULLTEXT KEY `Abstract1` (`Abstract`), + FULLTEXT KEY `Title1` (`Title`), + FULLTEXT KEY `Authors1` (`Authors`), + FULLTEXT KEY `SEARCH_FULL_IDX` (`Abstract`,`Title`,`Authors`) +) ENGINE=MyISAM AUTO_INCREMENT=26076 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishData` +-- + +DROP TABLE IF EXISTS `PublishData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` float(14,6) DEFAULT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishFreeze` +-- + +DROP TABLE IF EXISTS `PublishFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '2001-01-01', + `public` tinyint(4) NOT NULL DEFAULT 0, + `InbredSetId` smallint(5) unsigned DEFAULT 1, + `confidentiality` tinyint(3) DEFAULT 0, + `AuthorisedUsers` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + FOREIGN KEY (InbredSetId) REFERENCES InbredSet(InbredSetId), + KEY `InbredSetId` (`InbredSetId`) +) ENGINE=MyISAM AUTO_INCREMENT=60 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishSE` +-- + +DROP TABLE IF EXISTS `PublishSE`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishSE` ( + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `error` float NOT NULL, + UNIQUE KEY `DataId` (`DataId`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `PublishXRef` +-- + +DROP TABLE IF EXISTS `PublishXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `PublishXRef` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, + `PhenotypeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `PublicationId` smallint(5) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `mean` double DEFAULT NULL, + `Locus` char(50) DEFAULT NULL, + `LRS` double DEFAULT NULL, + `additive` double DEFAULT NULL, + `Sequence` smallint(5) unsigned NOT NULL DEFAULT 1, + `comments` text NOT NULL, + UNIQUE KEY `InbredSet` (`InbredSetId`,`Id`), + UNIQUE KEY `record` (`InbredSetId`,`PhenotypeId`,`PublicationId`,`Sequence`), + UNIQUE KEY `PhenotypeId` (`PhenotypeId`), + UNIQUE KEY `DataId` (`DataId`), + FOREIGN KEY (InbredSetId) REFERENCES InbredSet(InbredSetId), + FOREIGN KEY (PhenotypeId) REFERENCES Phenotype(Id), + FOREIGN KEY (PublicationId) REFERENCES Publication(Id), + KEY `InbredSetId` (`InbredSetId`), + KEY `Locus` (`Locus`), + KEY `PublicationId` (`PublicationId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `RatSnpPattern` +-- + +DROP TABLE IF EXISTS `RatSnpPattern`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `RatSnpPattern` ( + `Id` int(12) NOT NULL AUTO_INCREMENT, + `SnpId` int(12) NOT NULL, + `BN` char(1) DEFAULT NULL, + `F344` char(1) DEFAULT NULL, + `ACI` char(1) DEFAULT NULL, + `BBDP` char(1) DEFAULT NULL, + `FHH` char(1) DEFAULT NULL, + `FHL` char(1) DEFAULT NULL, + `GK` char(1) DEFAULT NULL, + `LE` char(1) DEFAULT NULL, + `LEW` char(1) DEFAULT NULL, + `LH` char(1) DEFAULT NULL, + `LL` char(1) DEFAULT NULL, + `LN` char(1) DEFAULT NULL, + `MHS` char(1) DEFAULT NULL, + `MNS` char(1) DEFAULT NULL, + `SBH` char(1) DEFAULT NULL, + `SBN` char(1) DEFAULT NULL, + `SHR` char(1) DEFAULT NULL, + `SHRSP` char(1) DEFAULT NULL, + `SR` char(1) DEFAULT NULL, + `SS` char(1) DEFAULT NULL, + `WAG` char(1) DEFAULT NULL, + `WLI` char(1) DEFAULT NULL, + `WMI` char(1) DEFAULT NULL, + `WKY` char(1) DEFAULT NULL, + `ACI_N` char(1) DEFAULT NULL, + `BN_N` char(1) DEFAULT NULL, + `BUF_N` char(1) DEFAULT NULL, + `F344_N` char(1) DEFAULT NULL, + `M520_N` char(1) DEFAULT NULL, + `MR_N` char(1) DEFAULT NULL, + `WKY_N` char(1) DEFAULT NULL, + `WN_N` char(1) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `SnpId` (`SnpId`) +) ENGINE=MyISAM AUTO_INCREMENT=4711685 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Sample` +-- + +DROP TABLE IF EXISTS `Sample`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Sample` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(30) DEFAULT NULL, + `Age` smallint(6) NOT NULL DEFAULT 0, + `Sex` enum('F','M') NOT NULL DEFAULT 'F', + `CreateTime` date NOT NULL DEFAULT '2001-01-01', + `TissueType` varchar(30) DEFAULT NULL, + `FromSrc` varchar(10) DEFAULT NULL, + `ImageURL` varchar(100) DEFAULT NULL, + `CELURL` varchar(120) DEFAULT NULL, + `DATURL` varchar(100) DEFAULT NULL, + `CHPURL` varchar(100) DEFAULT NULL, + `RPTURL` varchar(100) DEFAULT NULL, + `EXPURL` varchar(100) DEFAULT NULL, + `TXTURL` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`StrainId`,`Name`,`CreateTime`) +) ENGINE=MyISAM AUTO_INCREMENT=252 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SampleXRef` +-- + +DROP TABLE IF EXISTS `SampleXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SampleXRef` ( + `SampleId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + PRIMARY KEY (`ProbeFreezeId`,`SampleId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpAll` +-- + +DROP TABLE IF EXISTS `SnpAll`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpAll` ( + `Id` int(20) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` smallint(5) unsigned DEFAULT 1, + `SnpName` char(30) DEFAULT NULL, + `Rs` char(30) DEFAULT NULL, + `Chromosome` char(2) DEFAULT NULL, + `Position` double DEFAULT NULL, + `Position_2016` double DEFAULT NULL, + `Alleles` char(5) DEFAULT NULL, + `Source` char(35) DEFAULT NULL, + `ConservationScore` double DEFAULT NULL, + `3Prime_UTR` text DEFAULT NULL, + `5Prime_UTR` text DEFAULT NULL, + `Upstream` text DEFAULT NULL, + `Downstream` text DEFAULT NULL, + `Intron` char(1) DEFAULT NULL, + `Non_Splice_Site` text DEFAULT NULL, + `Splice_Site` text DEFAULT NULL, + `Intergenic` char(1) DEFAULT NULL, + `Exon` char(1) DEFAULT NULL, + `Non_Synonymous_Coding` text DEFAULT NULL, + `Synonymous_Coding` text DEFAULT NULL, + `Start_Gained` text DEFAULT NULL, + `Start_Lost` text DEFAULT NULL, + `Stop_Gained` text DEFAULT NULL, + `Stop_Lost` text DEFAULT NULL, + `Unknown_Effect_In_Exon` text DEFAULT NULL, + `Domain` varchar(50) DEFAULT NULL, + `Gene` varchar(30) DEFAULT NULL, + `Transcript` varchar(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `SnpName` (`SnpName`), + KEY `Rs` (`Rs`), + KEY `Position` (`Chromosome`,`Position`), + KEY `Source` (`Source`) +) ENGINE=InnoDB AUTO_INCREMENT=84086331 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpAllRat` +-- + +DROP TABLE IF EXISTS `SnpAllRat`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpAllRat` ( + `Id` int(20) NOT NULL AUTO_INCREMENT, + `SpeciesId` int(5) DEFAULT 2, + `SnpName` char(30) DEFAULT NULL, + `Chromosome` char(2) DEFAULT NULL, + `Position` double DEFAULT NULL, + `Alleles` char(5) DEFAULT NULL, + `Source` char(35) DEFAULT NULL, + `ConservationScore` double DEFAULT NULL, + `Domain` varchar(50) DEFAULT NULL, + `Gene` varchar(30) DEFAULT NULL, + `Transcript` varchar(50) DEFAULT NULL, + `Function` varchar(50) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `SnpName` (`SnpName`), + KEY `Position` (`Chromosome`,`Position`), + KEY `Source` (`Source`) +) ENGINE=MyISAM AUTO_INCREMENT=97663615 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpAllele_to_be_deleted` +-- + +DROP TABLE IF EXISTS `SnpAllele_to_be_deleted`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpAllele_to_be_deleted` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Base` char(20) DEFAULT NULL, + `Info` char(255) DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpPattern` +-- + +DROP TABLE IF EXISTS `SnpPattern`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpPattern` ( + `SnpId` int(10) unsigned NOT NULL DEFAULT 0, + `129P2/OlaHsd` char(1) DEFAULT NULL, + `129S1/SvImJ` char(1) DEFAULT NULL, + `129S5/SvEvBrd` char(1) DEFAULT NULL, + `AKR/J` char(1) DEFAULT NULL, + `A/J` char(1) DEFAULT NULL, + `BALB/cJ` char(1) DEFAULT NULL, + `C3H/HeJ` char(1) DEFAULT NULL, + `C57BL/6J` char(1) DEFAULT NULL, + `CAST/EiJ` char(1) DEFAULT NULL, + `CBA/J` char(1) DEFAULT NULL, + `DBA/2J` char(1) DEFAULT NULL, + `LP/J` char(1) DEFAULT NULL, + `NOD/ShiLtJ` char(1) DEFAULT NULL, + `NZO/HlLtJ` char(1) DEFAULT NULL, + `PWK/PhJ` char(1) DEFAULT NULL, + `SPRET/EiJ` char(1) DEFAULT NULL, + `WSB/EiJ` char(1) DEFAULT NULL, + `PWD/PhJ` char(1) DEFAULT NULL, + `SJL/J` char(1) DEFAULT NULL, + `NZL/LtJ` char(1) DEFAULT NULL, + `CZECHII/EiJ` char(1) DEFAULT NULL, + `CALB/RkJ` char(1) DEFAULT NULL, + `ST/bJ` char(1) DEFAULT NULL, + `ISS/IbgTejJ` char(1) DEFAULT NULL, + `C57L/J` char(1) DEFAULT NULL, + `Qsi5` char(1) DEFAULT NULL, + `B6A6_Esline_Regeneron` char(1) DEFAULT NULL, + `129T2/SvEmsJ` char(1) DEFAULT NULL, + `BALB/cByJ` char(1) DEFAULT NULL, + `NZB/BlNJ` char(1) DEFAULT NULL, + `P/J` char(1) DEFAULT NULL, + `I/LnJ` char(1) DEFAULT NULL, + `PERC/EiJ` char(1) DEFAULT NULL, + `TALLYHO/JngJ` char(1) DEFAULT NULL, + `CE/J` char(1) DEFAULT NULL, + `MRL/MpJ` char(1) DEFAULT NULL, + `PERA/EiJ` char(1) DEFAULT NULL, + `IS/CamRkJ` char(1) DEFAULT NULL, + `ZALENDE/EiJ` char(1) DEFAULT NULL, + `Fline` char(1) DEFAULT NULL, + `BTBRT<+>tf/J` char(1) DEFAULT NULL, + `O20` char(1) DEFAULT NULL, + `C58/J` char(1) DEFAULT NULL, + `BPH/2J` char(1) DEFAULT NULL, + `DDK/Pas` char(1) DEFAULT NULL, + `C57BL/6NHsd` char(1) DEFAULT NULL, + `C57BL/6NTac` char(1) DEFAULT NULL, + `129S4/SvJae` char(1) DEFAULT NULL, + `BPL/1J` char(1) DEFAULT NULL, + `BPN/3J` char(1) DEFAULT NULL, + `PL/J` char(1) DEFAULT NULL, + `DBA/1J` char(1) DEFAULT NULL, + `MSM/Ms` char(1) DEFAULT NULL, + `MA/MyJ` char(1) DEFAULT NULL, + `NZW/LacJ` char(1) DEFAULT NULL, + `C57BL/10J` char(1) DEFAULT NULL, + `C57BL/6ByJ` char(1) DEFAULT NULL, + `RF/J` char(1) DEFAULT NULL, + `C57BR/cdJ` char(1) DEFAULT NULL, + `129S6/SvEv` char(1) DEFAULT NULL, + `MAI/Pas` char(1) DEFAULT NULL, + `RIIIS/J` char(1) DEFAULT NULL, + `C57BL/6NNIH` char(1) DEFAULT NULL, + `FVB/NJ` char(1) DEFAULT NULL, + `SEG/Pas` char(1) DEFAULT NULL, + `MOLF/EiJ` char(1) DEFAULT NULL, + `C3HeB/FeJ` char(1) DEFAULT NULL, + `Lline` char(1) DEFAULT NULL, + `SKIVE/EiJ` char(1) DEFAULT NULL, + `C57BL/6NCrl` char(1) DEFAULT NULL, + `KK/HlJ` char(1) DEFAULT NULL, + `LG/J` char(1) DEFAULT NULL, + `C57BLKS/J` char(1) DEFAULT NULL, + `SM/J` char(1) DEFAULT NULL, + `NOR/LtJ` char(1) DEFAULT NULL, + `ILS/IbgTejJ` char(1) DEFAULT NULL, + `C57BL/6JOlaHsd` char(1) DEFAULT NULL, + `SWR/J` char(1) DEFAULT NULL, + `C57BL/6JBomTac` char(1) DEFAULT NULL, + `SOD1/EiJ` char(1) DEFAULT NULL, + `NON/LtJ` char(1) DEFAULT NULL, + `JF1/Ms` char(1) DEFAULT NULL, + `129X1/SvJ` char(1) DEFAULT NULL, + `C2T1_Esline_Nagy` char(1) DEFAULT NULL, + `C57BL/6NJ` char(1) DEFAULT NULL, + `LEWES/EiJ` char(1) DEFAULT NULL, + `RBA/DnJ` char(1) DEFAULT NULL, + `DDY/JclSidSeyFrkJ` char(1) DEFAULT NULL, + `SEA/GnJ` char(1) DEFAULT NULL, + `C57BL/6JCrl` char(1) DEFAULT NULL, + `EL/SuzSeyFrkJ` char(1) DEFAULT NULL, + `HTG/GoSfSnJ` char(1) DEFAULT NULL, + `129S2/SvHsd` char(1) DEFAULT NULL, + `MOLG/DnJ` char(1) DEFAULT NULL, + `BUB/BnJ` char(1) DEFAULT NULL, + PRIMARY KEY (`SnpId`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `SnpSource` +-- + +DROP TABLE IF EXISTS `SnpSource`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `SnpSource` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` char(35) DEFAULT NULL, + `DateCreated` date DEFAULT NULL, + `DateAdded` date DEFAULT NULL, + PRIMARY KEY (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=29 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Species` +-- + +DROP TABLE IF EXISTS `Species`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Species` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `SpeciesId` int(5) DEFAULT NULL, + `SpeciesName` varchar(50) DEFAULT NULL, + `Name` char(30) NOT NULL DEFAULT '', + `MenuName` char(50) DEFAULT NULL, + `FullName` char(100) NOT NULL DEFAULT '', + `TaxonomyId` int(11) DEFAULT NULL, + `OrderId` smallint(6) DEFAULT NULL, + PRIMARY KEY (`Id`), + KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=11 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Strain` +-- + +DROP TABLE IF EXISTS `Strain`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Strain` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `Name` varchar(100) DEFAULT NULL, + `Name2` varchar(100) DEFAULT NULL, + `SpeciesId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Symbol` char(5) DEFAULT NULL, + `Alias` varchar(255) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`,`SpeciesId`), + FOREIGN KEY (SpeciesId) REFERENCES Species(SpeciesId), + KEY `Symbol` (`Symbol`) +) ENGINE=MyISAM AUTO_INCREMENT=63438 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `StrainXRef` +-- + +DROP TABLE IF EXISTS `StrainXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `StrainXRef` ( + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `OrderId` smallint(5) unsigned NOT NULL DEFAULT 0, + `Used_for_mapping` char(1) DEFAULT 'N', + `PedigreeStatus` varchar(255) DEFAULT NULL, + PRIMARY KEY (`InbredSetId`,`StrainId`), + UNIQUE KEY `Orders` (`InbredSetId`,`OrderId`), + FOREIGN KEY (InbredSetId) REFERENCES InbredSet(InbredSetId), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TableComments` +-- + +DROP TABLE IF EXISTS `TableComments`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TableComments` ( + `TableName` varchar(100) NOT NULL DEFAULT '', + `Comment` text DEFAULT NULL, + PRIMARY KEY (`TableName`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TableFieldAnnotation` +-- + +DROP TABLE IF EXISTS `TableFieldAnnotation`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TableFieldAnnotation` ( + `TableField` varchar(100) NOT NULL DEFAULT '', + `Foreign_Key` varchar(100) DEFAULT NULL, + `Annotation` text DEFAULT NULL, + PRIMARY KEY (`TableField`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Temp` +-- + +DROP TABLE IF EXISTS `Temp`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Temp` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `dbdisplayname` varchar(255) DEFAULT NULL, + `Name` varchar(30) DEFAULT NULL, + `description` text DEFAULT NULL, + `createtime` datetime NOT NULL DEFAULT '2004-01-01 12:00:00', + `DataId` int(11) NOT NULL DEFAULT 0, + `InbredSetId` smallint(5) unsigned NOT NULL DEFAULT 1, + `IP` varchar(20) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`), + FOREIGN KEY (InbredSetId) REFERENCES InbredSet(InbredSetId) +) ENGINE=MyISAM AUTO_INCREMENT=98608 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TempData` +-- + +DROP TABLE IF EXISTS `TempData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TempData` ( + `Id` int(10) unsigned NOT NULL DEFAULT 0, + `StrainId` smallint(5) unsigned NOT NULL DEFAULT 0, + `value` double NOT NULL DEFAULT 0, + `SE` double DEFAULT NULL, + `NStrain` smallint(6) DEFAULT NULL, + UNIQUE KEY `DataId` (`Id`,`StrainId`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Tissue` +-- + +DROP TABLE IF EXISTS `Tissue`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Tissue` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `TissueId` int(5) DEFAULT NULL, + `TissueName` varchar(50) DEFAULT NULL, + `Name` char(50) DEFAULT NULL, + `Short_Name` char(30) NOT NULL DEFAULT '', + `BIRN_lex_ID` char(30) DEFAULT NULL, + `BIRN_lex_Name` char(30) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `Short_Name` (`Short_Name`), + UNIQUE KEY `Name` (`Name`) +) ENGINE=MyISAM AUTO_INCREMENT=180 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeFreeze` +-- + +DROP TABLE IF EXISTS `TissueProbeFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `ChipId` smallint(5) unsigned NOT NULL DEFAULT 0, + `StrainId` varchar(100) NOT NULL DEFAULT '0', + `Name` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `InbredSetId` smallint(5) unsigned DEFAULT 1, + PRIMARY KEY (`Id`), + UNIQUE KEY `Name` (`Name`), + UNIQUE KEY `FullName` (`FullName`), + FOREIGN KEY (StrainId) REFERENCES Strain(Id) +) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeSetData` +-- + +DROP TABLE IF EXISTS `TissueProbeSetData`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeSetData` ( + `Id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `TissueID` int(10) unsigned NOT NULL DEFAULT 0, + `value` float NOT NULL DEFAULT 0, + PRIMARY KEY (`Id`,`TissueID`), + FOREIGN KEY (TissueID) REFERENCES Tissue(TissueId) +) ENGINE=MyISAM AUTO_INCREMENT=90563 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeSetFreeze` +-- + +DROP TABLE IF EXISTS `TissueProbeSetFreeze`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeSetFreeze` ( + `Id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, + `TissueProbeFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `AvgID` smallint(5) unsigned NOT NULL DEFAULT 0, + `Name` varchar(40) DEFAULT NULL, + `Name2` varchar(100) NOT NULL DEFAULT '', + `FullName` varchar(100) NOT NULL DEFAULT '', + `ShortName` varchar(100) NOT NULL DEFAULT '', + `CreateTime` date NOT NULL DEFAULT '0000-00-00', + `public` tinyint(4) NOT NULL DEFAULT 0, + `confidentiality` tinyint(4) NOT NULL DEFAULT 0, + `AuthorisedUsers` varchar(100) DEFAULT NULL, + PRIMARY KEY (`Id`), + UNIQUE KEY `FullName` (`FullName`), + UNIQUE KEY `Name` (`Name`), + FOREIGN KEY (TissueProbeFreezeId) REFERENCES TissueProbeFreeze(Id), + KEY `NameIndex` (`Name2`) +) ENGINE=MyISAM AUTO_INCREMENT=3 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TissueProbeSetXRef` +-- + +DROP TABLE IF EXISTS `TissueProbeSetXRef`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TissueProbeSetXRef` ( + `TissueProbeSetFreezeId` smallint(5) unsigned NOT NULL DEFAULT 0, + `ProbesetId` int(10) unsigned NOT NULL DEFAULT 0, + `DataId` int(10) unsigned NOT NULL DEFAULT 0, + `Mean` float DEFAULT 0, + `useStatus` char(1) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `GeneId` varchar(20) DEFAULT NULL, + `Chr` char(3) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Mb_2016` double DEFAULT NULL, + `description` varchar(255) DEFAULT NULL, + `Probe_Target_Description` varchar(225) DEFAULT NULL, + PRIMARY KEY (`TissueProbeSetFreezeId`,`ProbesetId`), + UNIQUE KEY `DataId_IDX` (`DataId`), + FOREIGN KEY (TissueProbeSetFreezeId) REFERENCES TissueProbeSetFreeze(Id), + FOREIGN KEY (ProbesetId) REFERENCES ProbeSet(Id), + KEY `symbol_IDX` (`Symbol`), + KEY `GeneId_IDX` (`GeneId`), + KEY `Position` (`Chr`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `TraitMetadata` +-- + +DROP TABLE IF EXISTS `TraitMetadata`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `TraitMetadata` ( + `type` varchar(255) DEFAULT NULL, + `value` longtext DEFAULT NULL +) ENGINE=InnoDB DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `User` +-- + +DROP TABLE IF EXISTS `User`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `User` ( + `id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `name` varchar(100) NOT NULL DEFAULT '', + `password` varchar(100) NOT NULL DEFAULT '', + `email` varchar(100) DEFAULT NULL, + `createtime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00', + `user_ip` varchar(20) DEFAULT NULL, + `lastlogin` datetime NOT NULL DEFAULT '0000-00-00 00:00:00', + `disable` enum('Y','N') DEFAULT 'N', + `privilege` enum('guest','user','admin','root') DEFAULT NULL, + `grpName` varchar(40) DEFAULT NULL, + PRIMARY KEY (`id`), + UNIQUE KEY `name_index` (`name`) +) ENGINE=MyISAM AUTO_INCREMENT=353 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `UserPrivilege` +-- + +DROP TABLE IF EXISTS `UserPrivilege`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `UserPrivilege` ( + `UserId` int(10) unsigned NOT NULL, + `ProbeSetFreezeId` smallint(5) unsigned NOT NULL, + `download_result_priv` enum('N','Y') NOT NULL DEFAULT 'N', + KEY `userId` (`UserId`,`ProbeSetFreezeId`), + FOREIGN KEY (UserId) REFERENCES User(id), + FOREIGN KEY (ProbeSetFreezeId) REFERENCES ProbeSetFreeze(Id) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `Vlookup` +-- + +DROP TABLE IF EXISTS `Vlookup`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `Vlookup` ( + `Id` int(11) NOT NULL AUTO_INCREMENT, + `VLProbeSetId` text DEFAULT NULL, + `VLBlatSeq` longtext DEFAULT NULL, + `InfoFileId` int(5) DEFAULT NULL, + `DatasetId` int(5) DEFAULT NULL, + `SpeciesId` int(5) DEFAULT NULL, + `TissueId` int(5) DEFAULT NULL, + `InbredSetId` int(5) DEFAULT NULL, + `GeneChipId` int(5) DEFAULT NULL, + `AvgMethodId` int(5) DEFAULT NULL, + `InfoPageName` varchar(255) DEFAULT NULL, + `GN_AccesionId` int(5) DEFAULT NULL, + `Name` varchar(100) DEFAULT NULL, + `GeneId` varchar(10) DEFAULT NULL, + `Mb` double DEFAULT NULL, + `Chr` varchar(10) DEFAULT NULL, + `Probe_set_Blat_Mb_start` double DEFAULT NULL, + `Probe_set_Blat_Mb_end` double DEFAULT NULL, + `Strand` char(1) DEFAULT NULL, + `TxStart` double DEFAULT NULL, + `TxEnd` double DEFAULT NULL, + `cdsStart` double DEFAULT NULL, + `cdsEnd` double DEFAULT NULL, + `exonCount` int(7) DEFAULT NULL, + `exonStarts` text DEFAULT NULL, + `exonEnds` text DEFAULT NULL, + `ProteinID` varchar(15) DEFAULT NULL, + `AlignID` varchar(10) DEFAULT NULL, + `kgID` varchar(10) DEFAULT NULL, + `NM_ID` varchar(15) DEFAULT NULL, + `SnpName` char(30) DEFAULT NULL, + `Position` double DEFAULT NULL, + `HMDB_ID` varchar(255) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `description` longtext DEFAULT NULL, + `alias` longtext DEFAULT NULL, + `Full_Description` longtext DEFAULT NULL, + `BlatSeq` text DEFAULT NULL, + `ChEBI_ID` int(10) DEFAULT NULL, + `ChEMBL_ID` varchar(100) DEFAULT NULL, + `CAS_number` varchar(100) DEFAULT NULL, + `PubChem_ID` int(10) DEFAULT NULL, + `ChemSpider_ID` varchar(10) DEFAULT NULL, + `UNII_ID` varchar(100) DEFAULT NULL, + `EC_number` varchar(100) DEFAULT NULL, + `KEGG_ID` varchar(100) DEFAULT NULL, + `Molecular_Weight` varchar(100) DEFAULT NULL, + `Nugowiki_ID` varchar(100) DEFAULT NULL, + `assembly` varchar(10) DEFAULT NULL, + KEY `Id` (`Id`) +) ENGINE=MyISAM AUTO_INCREMENT=753474564 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `login` +-- + +DROP TABLE IF EXISTS `login`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `login` ( + `id` varchar(36) NOT NULL, + `user` varchar(36) DEFAULT NULL, + `timestamp` datetime DEFAULT NULL, + `ip_address` varchar(39) DEFAULT NULL, + `successful` tinyint(1) NOT NULL, + `session_id` text DEFAULT NULL, + `assumed_by` varchar(36) DEFAULT NULL, + PRIMARY KEY (`id`), + FOREIGN KEY (user) REFERENCES user(id), + KEY `user` (`user`), + KEY `assumed_by` (`assumed_by`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `metadata_audit` +-- + +DROP TABLE IF EXISTS `metadata_audit`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `metadata_audit` ( + `id` int(11) NOT NULL AUTO_INCREMENT, + `dataset_id` int(11) NOT NULL, + `editor` varchar(255) NOT NULL, + `json_diff_data` varchar(2048) NOT NULL, + `time_stamp` timestamp NOT NULL DEFAULT current_timestamp(), + PRIMARY KEY (`id`), + CONSTRAINT `CONSTRAINT_1` CHECK (json_valid(`json_diff_data`)) +) ENGINE=InnoDB AUTO_INCREMENT=3 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `pubmedsearch` +-- + +DROP TABLE IF EXISTS `pubmedsearch`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `pubmedsearch` ( + `id` bigint(20) NOT NULL AUTO_INCREMENT, + `pubmedid` bigint(20) DEFAULT NULL, + `title` text DEFAULT NULL, + `authorfullname` text DEFAULT NULL, + `authorshortname` text DEFAULT NULL, + `institute` text DEFAULT NULL, + `geneid` varchar(20) DEFAULT NULL, + PRIMARY KEY (`id`), + KEY `NewIndex4` (`geneid`), + FULLTEXT KEY `NewIndex1` (`institute`), + FULLTEXT KEY `NewIndex3` (`authorfullname`,`authorshortname`) +) ENGINE=MyISAM AUTO_INCREMENT=1401371 DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `role` +-- + +DROP TABLE IF EXISTS `role`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `role` ( + `the_id` varchar(36) NOT NULL, + `name` varchar(80) NOT NULL, + `description` varchar(255) DEFAULT NULL, + PRIMARY KEY (`the_id`), + UNIQUE KEY `name` (`name`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `roles_users` +-- + +DROP TABLE IF EXISTS `roles_users`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `roles_users` ( + `user_id` int(11) DEFAULT NULL, + `role_id` int(11) DEFAULT NULL, + KEY `user_id` (`user_id`), + KEY `role_id` (`role_id`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `temporary` +-- + +DROP TABLE IF EXISTS `temporary`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `temporary` ( + `tax_id` varchar(20) DEFAULT NULL, + `GeneID` varchar(20) DEFAULT NULL, + `Symbol` varchar(100) DEFAULT NULL, + `OMIM` varchar(100) DEFAULT NULL, + `HomoloGene` varchar(100) DEFAULT NULL, + `Other_GeneID` varchar(20) DEFAULT NULL +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `user` +-- + +DROP TABLE IF EXISTS `user`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `user` ( + `id` varchar(36) NOT NULL, + `email_address` varchar(50) NOT NULL, + `password` text NOT NULL, + `full_name` varchar(50) DEFAULT NULL, + `organization` varchar(50) DEFAULT NULL, + `active` tinyint(1) NOT NULL, + `registration_info` text DEFAULT NULL, + `confirmed` text DEFAULT NULL, + `superuser` text DEFAULT NULL, + PRIMARY KEY (`id`), + UNIQUE KEY `email_address` (`email_address`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `user_collection` +-- + +DROP TABLE IF EXISTS `user_collection`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `user_collection` ( + `id` varchar(36) NOT NULL, + `user` varchar(36) DEFAULT NULL, + `name` text DEFAULT NULL, + `created_timestamp` datetime DEFAULT NULL, + `changed_timestamp` datetime DEFAULT NULL, + `members` text DEFAULT NULL, + PRIMARY KEY (`id`), + FOREIGN KEY (user) REFERENCES user(id), + KEY `user` (`user`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; + +-- +-- Table structure for table `user_openids` +-- + +DROP TABLE IF EXISTS `user_openids`; +/*!40101 SET @saved_cs_client = @@character_set_client */; +/*!40101 SET character_set_client = utf8 */; +CREATE TABLE `user_openids` ( + `openid_url` varchar(255) NOT NULL, + `user_id` varchar(36) NOT NULL, + PRIMARY KEY (`openid_url`), + FOREIGN KEY (user_id) REFERENCES user(id), + KEY `user_id` (`user_id`) +) ENGINE=MyISAM DEFAULT CHARSET=latin1; +/*!40101 SET character_set_client = @saved_cs_client */; +/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */; + +/*!40101 SET SQL_MODE=@OLD_SQL_MODE */; +/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */; +/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */; +/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */; +/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */; +/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */; +/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */; + +-- Dump completed on 2021-07-14 5:26:53 diff --git a/sql/schema.svg b/sql/schema.svg new file mode 100644 index 0000000..2451899 --- /dev/null +++ b/sql/schema.svg @@ -0,0 +1,1430 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?> +<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" + "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd"> +<!-- Generated by graphviz version 2.42.3 (20191010.1750) + --> +<!-- Title: test Pages: 1 --> +<svg width="5065pt" height="3178pt" + viewBox="0.00 0.00 5065.18 3178.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink"> +<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 3174)"> +<title>test</title> +<polygon fill="white" stroke="transparent" points="-4,4 -4,-3174 5061.18,-3174 5061.18,4 -4,4"/> +<g id="clust1" class="cluster"> +<title>cluster_Others</title> +<polygon fill="none" stroke="black" points="3495,-615.5 3495,-1429.5 5014,-1429.5 5014,-615.5 3495,-615.5"/> +<text text-anchor="middle" x="4254.5" y="-1414.3" font-family="Times,serif" font-size="14.00">Others</text> +</g> +<!-- node2 --> +<g id="node1" class="node"> +<title>node2</title> +<polygon fill="white" stroke="black" points="933.5,-699 933.5,-820 1066.5,-820 1066.5,-699 933.5,-699"/> +<text text-anchor="middle" x="1000" y="-804.8" font-family="Times,serif" font-size="14.00">BXDSnpPosition</text> +<polyline fill="none" stroke="black" points="933.5,-797 1066.5,-797 "/> +<text text-anchor="start" x="941.5" y="-781.8" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="941.5" y="-766.8" font-family="Times,serif" font-size="14.00">- Chr</text> +<text text-anchor="start" x="941.5" y="-751.8" font-family="Times,serif" font-size="14.00">- StrainId1</text> +<text text-anchor="start" x="941.5" y="-736.8" font-family="Times,serif" font-size="14.00">- StrainId2</text> +<text text-anchor="start" x="941.5" y="-721.8" font-family="Times,serif" font-size="14.00">- Mb</text> +<text text-anchor="start" x="941.5" y="-706.8" font-family="Times,serif" font-size="14.00">- Mb_2016</text> +</g> +<!-- node3 --> +<g id="node2" class="node"> +<title>node3</title> +<polygon fill="white" stroke="black" points="2127,-1277 2127,-1338 2243,-1338 2243,-1277 2127,-1277"/> +<text text-anchor="middle" x="2185" y="-1322.8" font-family="Times,serif" font-size="14.00">CaseAttribute</text> +<polyline fill="none" stroke="black" points="2127,-1315 2243,-1315 "/> +<text text-anchor="start" x="2135" y="-1299.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2135" y="-1284.8" font-family="Times,serif" font-size="14.00">- Name</text> +</g> +<!-- node4 --> +<g id="node3" class="node"> +<title>node4</title> +<polygon fill="white" stroke="black" points="2346.5,-714 2346.5,-805 2501.5,-805 2501.5,-714 2346.5,-714"/> +<text text-anchor="middle" x="2424" y="-789.8" font-family="Times,serif" font-size="14.00">CaseAttributeXRef</text> +<polyline fill="none" stroke="black" points="2346.5,-782 2501.5,-782 "/> +<text text-anchor="start" x="2354.5" y="-766.8" font-family="Times,serif" font-size="14.00">- ProbeSetFreezeId</text> +<text text-anchor="start" x="2354.5" y="-751.8" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="2354.5" y="-736.8" font-family="Times,serif" font-size="14.00">- CaseAttributeId</text> +<text text-anchor="start" x="2354.5" y="-721.8" font-family="Times,serif" font-size="14.00">- Value</text> +</g> +<!-- node3->node4 --> +<g id="edge1" class="edge"> +<title>node3->node4</title> +<path fill="none" stroke="black" d="M2204.49,-1276.97C2235.74,-1228.64 2297.55,-1128.9 2337,-1038 2369.52,-963.07 2395.68,-872.01 2410.54,-815.14"/> +<polygon fill="black" stroke="black" points="2413.97,-815.84 2413.09,-805.28 2407.2,-814.09 2413.97,-815.84"/> +</g> +<!-- node5 --> +<g id="node4" class="node"> +<title>node5</title> +<polygon fill="white" stroke="black" points="1970,-714 1970,-805 2152,-805 2152,-714 1970,-714"/> +<text text-anchor="middle" x="2061" y="-789.8" font-family="Times,serif" font-size="14.00">CaseAttributeXRefNew</text> +<polyline fill="none" stroke="black" points="1970,-782 2152,-782 "/> +<text text-anchor="start" x="1978" y="-766.8" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="1978" y="-751.8" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1978" y="-736.8" font-family="Times,serif" font-size="14.00">- CaseAttributeId</text> +<text text-anchor="start" x="1978" y="-721.8" font-family="Times,serif" font-size="14.00">- Value</text> +</g> +<!-- node3->node5 --> +<g id="edge2" class="edge"> +<title>node3->node5</title> +<path fill="none" stroke="black" d="M2178.25,-1276.76C2158.28,-1188.84 2099.32,-929.21 2073.43,-815.22"/> +<polygon fill="black" stroke="black" points="2076.8,-814.28 2071.18,-805.3 2069.98,-815.83 2076.8,-814.28"/> +</g> +<!-- node6 --> +<g id="node5" class="node"> +<title>node6</title> +<polygon fill="white" stroke="black" points="3616,-2268 3616,-2374 3712,-2374 3712,-2268 3616,-2268"/> +<text text-anchor="middle" x="3664" y="-2358.8" font-family="Times,serif" font-size="14.00">DBList</text> +<polyline fill="none" stroke="black" points="3616,-2351 3712,-2351 "/> +<text text-anchor="start" x="3624" y="-2335.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3624" y="-2320.8" font-family="Times,serif" font-size="14.00">- DBTypeId</text> +<text text-anchor="start" x="3624" y="-2305.8" font-family="Times,serif" font-size="14.00">- FreezeId</text> +<text text-anchor="start" x="3624" y="-2290.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="3624" y="-2275.8" font-family="Times,serif" font-size="14.00">- Code</text> +</g> +<!-- node7 --> +<g id="node6" class="node"> +<title>node7</title> +<polygon fill="white" stroke="black" points="3627.5,-3003.5 3627.5,-3064.5 3700.5,-3064.5 3700.5,-3003.5 3627.5,-3003.5"/> +<text text-anchor="middle" x="3664" y="-3049.3" font-family="Times,serif" font-size="14.00">DBType</text> +<polyline fill="none" stroke="black" points="3627.5,-3041.5 3700.5,-3041.5 "/> +<text text-anchor="start" x="3635.5" y="-3026.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3635.5" y="-3011.3" font-family="Times,serif" font-size="14.00">- Name</text> +</g> +<!-- node7->node6 --> +<g id="edge3" class="edge"> +<title>node7->node6</title> +<path fill="none" stroke="black" d="M3664,-3003.35C3664,-2896.78 3664,-2531.61 3664,-2384.32"/> +<polygon fill="black" stroke="black" points="3667.5,-2384.1 3664,-2374.1 3660.5,-2384.1 3667.5,-2384.1"/> +</g> +<!-- node8 --> +<g id="node7" class="node"> +<title>node8</title> +<polygon fill="white" stroke="black" points="3718.5,-2898.5 3718.5,-3169.5 3897.5,-3169.5 3897.5,-2898.5 3718.5,-2898.5"/> +<text text-anchor="middle" x="3808" y="-3154.3" font-family="Times,serif" font-size="14.00">Datasets</text> +<polyline fill="none" stroke="black" points="3718.5,-3146.5 3897.5,-3146.5 "/> +<text text-anchor="start" x="3726.5" y="-3131.3" font-family="Times,serif" font-size="14.00">- DatasetId</text> +<text text-anchor="start" x="3726.5" y="-3116.3" font-family="Times,serif" font-size="14.00">- DatasetName</text> +<text text-anchor="start" x="3726.5" y="-3101.3" font-family="Times,serif" font-size="14.00">- GeoSeries</text> +<text text-anchor="start" x="3726.5" y="-3086.3" font-family="Times,serif" font-size="14.00">- PublicationTitle</text> +<text text-anchor="start" x="3726.5" y="-3071.3" font-family="Times,serif" font-size="14.00">- Summary</text> +<text text-anchor="start" x="3726.5" y="-3056.3" font-family="Times,serif" font-size="14.00">- ExperimentDesign</text> +<text text-anchor="start" x="3726.5" y="-3041.3" font-family="Times,serif" font-size="14.00">- AboutCases</text> +<text text-anchor="start" x="3726.5" y="-3026.3" font-family="Times,serif" font-size="14.00">- AboutTissue</text> +<text text-anchor="start" x="3726.5" y="-3011.3" font-family="Times,serif" font-size="14.00">- AboutPlatform</text> +<text text-anchor="start" x="3726.5" y="-2996.3" font-family="Times,serif" font-size="14.00">- AboutDataProcessing</text> +<text text-anchor="start" x="3726.5" y="-2981.3" font-family="Times,serif" font-size="14.00">- Contributors</text> +<text text-anchor="start" x="3726.5" y="-2966.3" font-family="Times,serif" font-size="14.00">- Citation</text> +<text text-anchor="start" x="3726.5" y="-2951.3" font-family="Times,serif" font-size="14.00">- Acknowledgment</text> +<text text-anchor="start" x="3726.5" y="-2936.3" font-family="Times,serif" font-size="14.00">- Notes</text> +<text text-anchor="start" x="3726.5" y="-2921.3" font-family="Times,serif" font-size="14.00">- InvestigatorId</text> +<text text-anchor="start" x="3726.5" y="-2906.3" font-family="Times,serif" font-size="14.00">- DatasetStatusId</text> +</g> +<!-- node10 --> +<g id="node8" class="node"> +<title>node10</title> +<polygon fill="white" stroke="black" points="431,-1262 431,-1353 553,-1353 553,-1262 431,-1262"/> +<text text-anchor="middle" x="492" y="-1337.8" font-family="Times,serif" font-size="14.00">EnsemblChip</text> +<polyline fill="none" stroke="black" points="431,-1330 553,-1330 "/> +<text text-anchor="start" x="439" y="-1314.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="439" y="-1299.8" font-family="Times,serif" font-size="14.00">- ProbeSetSize</text> +<text text-anchor="start" x="439" y="-1284.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="439" y="-1269.8" font-family="Times,serif" font-size="14.00">- Type</text> +</g> +<!-- node13 --> +<g id="node11" class="node"> +<title>node13</title> +<polygon fill="white" stroke="black" points="104,-729 104,-790 286,-790 286,-729 104,-729"/> +<text text-anchor="middle" x="195" y="-774.8" font-family="Times,serif" font-size="14.00">GeneChipEnsemblXRef</text> +<polyline fill="none" stroke="black" points="104,-767 286,-767 "/> +<text text-anchor="start" x="112" y="-751.8" font-family="Times,serif" font-size="14.00">- GeneChipId</text> +<text text-anchor="start" x="112" y="-736.8" font-family="Times,serif" font-size="14.00">- EnsemblChipId</text> +</g> +<!-- node10->node13 --> +<g id="edge4" class="edge"> +<title>node10->node13</title> +<path fill="none" stroke="black" d="M490.64,-1261.97C486.62,-1209.8 472.04,-1124.12 421,-1074 379.45,-1033.19 337.55,-1077.77 295,-1038 226.88,-974.34 205.07,-860.87 198.16,-800.64"/> +<polygon fill="black" stroke="black" points="201.61,-799.96 197.07,-790.38 194.65,-800.7 201.61,-799.96"/> +</g> +<!-- node11 --> +<g id="node9" class="node"> +<title>node11</title> +<polygon fill="white" stroke="black" points="571.5,-1269.5 571.5,-1345.5 666.5,-1345.5 666.5,-1269.5 571.5,-1269.5"/> +<text text-anchor="middle" x="619" y="-1330.3" font-family="Times,serif" font-size="14.00">Genbank</text> +<polyline fill="none" stroke="black" points="571.5,-1322.5 666.5,-1322.5 "/> +<text text-anchor="start" x="579.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="579.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- Sequence</text> +<text text-anchor="start" x="579.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +</g> +<!-- node14 --> +<g id="node12" class="node"> +<title>node14</title> +<polygon fill="white" stroke="black" points="304,-481.5 304,-1037.5 466,-1037.5 466,-481.5 304,-481.5"/> +<text text-anchor="middle" x="385" y="-1022.3" font-family="Times,serif" font-size="14.00">GeneList</text> +<polyline fill="none" stroke="black" points="304,-1014.5 466,-1014.5 "/> +<text text-anchor="start" x="312" y="-999.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="312" y="-984.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="312" y="-969.3" font-family="Times,serif" font-size="14.00">- GeneSymbol</text> +<text text-anchor="start" x="312" y="-954.3" font-family="Times,serif" font-size="14.00">- GeneDescription</text> +<text text-anchor="start" x="312" y="-939.3" font-family="Times,serif" font-size="14.00">- Chromosome</text> +<text text-anchor="start" x="312" y="-924.3" font-family="Times,serif" font-size="14.00">- TxStart</text> +<text text-anchor="start" x="312" y="-909.3" font-family="Times,serif" font-size="14.00">- TxStart_2016</text> +<text text-anchor="start" x="312" y="-894.3" font-family="Times,serif" font-size="14.00">- TxEnd</text> +<text text-anchor="start" x="312" y="-879.3" font-family="Times,serif" font-size="14.00">- TxEnd_2016</text> +<text text-anchor="start" x="312" y="-864.3" font-family="Times,serif" font-size="14.00">- Strand</text> +<text text-anchor="start" x="312" y="-849.3" font-family="Times,serif" font-size="14.00">- GeneID</text> +<text text-anchor="start" x="312" y="-834.3" font-family="Times,serif" font-size="14.00">- NM_ID</text> +<text text-anchor="start" x="312" y="-819.3" font-family="Times,serif" font-size="14.00">- kgID</text> +<text text-anchor="start" x="312" y="-804.3" font-family="Times,serif" font-size="14.00">- GenBankID</text> +<text text-anchor="start" x="312" y="-789.3" font-family="Times,serif" font-size="14.00">- UnigenID</text> +<text text-anchor="start" x="312" y="-774.3" font-family="Times,serif" font-size="14.00">- ProteinID</text> +<text text-anchor="start" x="312" y="-759.3" font-family="Times,serif" font-size="14.00">- AlignID</text> +<text text-anchor="start" x="312" y="-744.3" font-family="Times,serif" font-size="14.00">- exonCount</text> +<text text-anchor="start" x="312" y="-729.3" font-family="Times,serif" font-size="14.00">- exonStarts</text> +<text text-anchor="start" x="312" y="-714.3" font-family="Times,serif" font-size="14.00">- exonEnds</text> +<text text-anchor="start" x="312" y="-699.3" font-family="Times,serif" font-size="14.00">- cdsStart</text> +<text text-anchor="start" x="312" y="-684.3" font-family="Times,serif" font-size="14.00">- cdsStart_2016</text> +<text text-anchor="start" x="312" y="-669.3" font-family="Times,serif" font-size="14.00">- cdsEnd</text> +<text text-anchor="start" x="312" y="-654.3" font-family="Times,serif" font-size="14.00">- cdsEnd_2016</text> +<text text-anchor="start" x="312" y="-639.3" font-family="Times,serif" font-size="14.00">- TxStart_mm8</text> +<text text-anchor="start" x="312" y="-624.3" font-family="Times,serif" font-size="14.00">- TxEnd_mm8</text> +<text text-anchor="start" x="312" y="-609.3" font-family="Times,serif" font-size="14.00">- Strand_mm8</text> +<text text-anchor="start" x="312" y="-594.3" font-family="Times,serif" font-size="14.00">- exonCount_mm8</text> +<text text-anchor="start" x="312" y="-579.3" font-family="Times,serif" font-size="14.00">- exonStarts_mm8</text> +<text text-anchor="start" x="312" y="-564.3" font-family="Times,serif" font-size="14.00">- exonEnds_mm8</text> +<text text-anchor="start" x="312" y="-549.3" font-family="Times,serif" font-size="14.00">- cdsStart_mm8</text> +<text text-anchor="start" x="312" y="-534.3" font-family="Times,serif" font-size="14.00">- cdsEnd_mm8</text> +<text text-anchor="start" x="312" y="-519.3" font-family="Times,serif" font-size="14.00">- Chromosome_mm8</text> +<text text-anchor="start" x="312" y="-504.3" font-family="Times,serif" font-size="14.00">- Info_mm9</text> +<text text-anchor="start" x="312" y="-489.3" font-family="Times,serif" font-size="14.00">- RGD_ID</text> +</g> +<!-- node11->node14 --> +<g id="edge5" class="edge"> +<title>node11->node14</title> +<path fill="none" stroke="black" d="M619.75,-1269.26C618.77,-1219.08 609.78,-1129.66 562,-1074 534.74,-1042.25 503.4,-1068.73 475,-1038 474.23,-1037.16 473.46,-1036.32 472.7,-1035.47"/> +<polygon fill="none" stroke="black" points="475.18,-1032.99 466.03,-1027.65 469.86,-1037.53 475.18,-1032.99"/> +</g> +<!-- node12 --> +<g id="node10" class="node"> +<title>node12</title> +<polygon fill="white" stroke="black" points="126.5,-1232 126.5,-1383 263.5,-1383 263.5,-1232 126.5,-1232"/> +<text text-anchor="middle" x="195" y="-1367.8" font-family="Times,serif" font-size="14.00">GeneChip</text> +<polyline fill="none" stroke="black" points="126.5,-1360 263.5,-1360 "/> +<text text-anchor="start" x="134.5" y="-1344.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="134.5" y="-1329.8" font-family="Times,serif" font-size="14.00">- GeneChipId</text> +<text text-anchor="start" x="134.5" y="-1314.8" font-family="Times,serif" font-size="14.00">- GeneChipName</text> +<text text-anchor="start" x="134.5" y="-1299.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="134.5" y="-1284.8" font-family="Times,serif" font-size="14.00">- GeoPlatform</text> +<text text-anchor="start" x="134.5" y="-1269.8" font-family="Times,serif" font-size="14.00">- Title</text> +<text text-anchor="start" x="134.5" y="-1254.8" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="134.5" y="-1239.8" font-family="Times,serif" font-size="14.00">- GO_tree_value</text> +</g> +<!-- node12->node13 --> +<g id="edge6" class="edge"> +<title>node12->node13</title> +<path fill="none" stroke="black" d="M195,-1231.73C195,-1114.43 195,-891.23 195,-800.42"/> +<polygon fill="black" stroke="black" points="198.5,-800.27 195,-790.27 191.5,-800.27 198.5,-800.27"/> +</g> +<!-- node15 --> +<g id="node13" class="node"> +<title>node15</title> +<polygon fill="white" stroke="black" points="0,-1194.5 0,-1420.5 108,-1420.5 108,-1194.5 0,-1194.5"/> +<text text-anchor="middle" x="54" y="-1405.3" font-family="Times,serif" font-size="14.00">GeneRIF</text> +<polyline fill="none" stroke="black" points="0,-1397.5 108,-1397.5 "/> +<text text-anchor="start" x="8" y="-1382.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="8" y="-1367.3" font-family="Times,serif" font-size="14.00">- versionId</text> +<text text-anchor="start" x="8" y="-1352.3" font-family="Times,serif" font-size="14.00">- symbol</text> +<text text-anchor="start" x="8" y="-1337.3" font-family="Times,serif" font-size="14.00">- PubMed_ID</text> +<text text-anchor="start" x="8" y="-1322.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="8" y="-1307.3" font-family="Times,serif" font-size="14.00">- comment</text> +<text text-anchor="start" x="8" y="-1292.3" font-family="Times,serif" font-size="14.00">- email</text> +<text text-anchor="start" x="8" y="-1277.3" font-family="Times,serif" font-size="14.00">- createtime</text> +<text text-anchor="start" x="8" y="-1262.3" font-family="Times,serif" font-size="14.00">- user_ip</text> +<text text-anchor="start" x="8" y="-1247.3" font-family="Times,serif" font-size="14.00">- weburl</text> +<text text-anchor="start" x="8" y="-1232.3" font-family="Times,serif" font-size="14.00">- initial</text> +<text text-anchor="start" x="8" y="-1217.3" font-family="Times,serif" font-size="14.00">- display</text> +<text text-anchor="start" x="8" y="-1202.3" font-family="Times,serif" font-size="14.00">- reason</text> +</g> +<!-- node16 --> +<g id="node14" class="node"> +<title>node16</title> +<polygon fill="white" stroke="black" points="281.5,-1239.5 281.5,-1375.5 412.5,-1375.5 412.5,-1239.5 281.5,-1239.5"/> +<text text-anchor="middle" x="347" y="-1360.3" font-family="Times,serif" font-size="14.00">GeneRIF_BASIC</text> +<polyline fill="none" stroke="black" points="281.5,-1352.5 412.5,-1352.5 "/> +<text text-anchor="start" x="289.5" y="-1337.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="289.5" y="-1322.3" font-family="Times,serif" font-size="14.00">- GeneId</text> +<text text-anchor="start" x="289.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- symbol</text> +<text text-anchor="start" x="289.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- PubMed_ID</text> +<text text-anchor="start" x="289.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- createtime</text> +<text text-anchor="start" x="289.5" y="-1262.3" font-family="Times,serif" font-size="14.00">- comment</text> +<text text-anchor="start" x="289.5" y="-1247.3" font-family="Times,serif" font-size="14.00">- VersionId</text> +</g> +<!-- node17 --> +<g id="node15" class="node"> +<title>node17</title> +<polygon fill="white" stroke="black" points="1741.5,-1179.5 1741.5,-1435.5 1894.5,-1435.5 1894.5,-1179.5 1741.5,-1179.5"/> +<text text-anchor="middle" x="1818" y="-1420.3" font-family="Times,serif" font-size="14.00">Geno</text> +<polyline fill="none" stroke="black" points="1741.5,-1412.5 1894.5,-1412.5 "/> +<text text-anchor="start" x="1749.5" y="-1397.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1749.5" y="-1382.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="1749.5" y="-1367.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="1749.5" y="-1352.3" font-family="Times,serif" font-size="14.00">- Marker_Name</text> +<text text-anchor="start" x="1749.5" y="-1337.3" font-family="Times,serif" font-size="14.00">- Chr</text> +<text text-anchor="start" x="1749.5" y="-1322.3" font-family="Times,serif" font-size="14.00">- Mb</text> +<text text-anchor="start" x="1749.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- Mb_2016</text> +<text text-anchor="start" x="1749.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- Sequence</text> +<text text-anchor="start" x="1749.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- Source</text> +<text text-anchor="start" x="1749.5" y="-1262.3" font-family="Times,serif" font-size="14.00">- chr_num</text> +<text text-anchor="start" x="1749.5" y="-1247.3" font-family="Times,serif" font-size="14.00">- Source2</text> +<text text-anchor="start" x="1749.5" y="-1232.3" font-family="Times,serif" font-size="14.00">- Comments</text> +<text text-anchor="start" x="1749.5" y="-1217.3" font-family="Times,serif" font-size="14.00">- used_by_geno_file</text> +<text text-anchor="start" x="1749.5" y="-1202.3" font-family="Times,serif" font-size="14.00">- Mb_mm8</text> +<text text-anchor="start" x="1749.5" y="-1187.3" font-family="Times,serif" font-size="14.00">- Chr_mm8</text> +</g> +<!-- node20 --> +<g id="node18" class="node"> +<title>node20</title> +<polygon fill="white" stroke="black" points="2264,-293.5 2264,-399.5 2422,-399.5 2422,-293.5 2264,-293.5"/> +<text text-anchor="middle" x="2343" y="-384.3" font-family="Times,serif" font-size="14.00">GenoXRef</text> +<polyline fill="none" stroke="black" points="2264,-376.5 2422,-376.5 "/> +<text text-anchor="start" x="2272" y="-361.3" font-family="Times,serif" font-size="14.00">- GenoFreezeId</text> +<text text-anchor="start" x="2272" y="-346.3" font-family="Times,serif" font-size="14.00">- GenoId</text> +<text text-anchor="start" x="2272" y="-331.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="2272" y="-316.3" font-family="Times,serif" font-size="14.00">- cM</text> +<text text-anchor="start" x="2272" y="-301.3" font-family="Times,serif" font-size="14.00">- Used_for_mapping</text> +</g> +<!-- node17->node20 --> +<g id="edge7" class="edge"> +<title>node17->node20</title> +<path fill="none" stroke="black" d="M1876.29,-1179.2C1893.94,-1135.33 1911.43,-1085.32 1922,-1038 1935.52,-977.45 1919.45,-527.07 1961,-481 2023.25,-411.98 2079.36,-475.95 2167,-445 2196.87,-434.45 2227.66,-419.14 2254.98,-403.77"/> +<polygon fill="black" stroke="black" points="2256.77,-406.78 2263.72,-398.78 2253.3,-400.7 2256.77,-406.78"/> +</g> +<!-- node18 --> +<g id="node16" class="node"> +<title>node18</title> +<polygon fill="white" stroke="black" points="1084.5,-721.5 1084.5,-797.5 1171.5,-797.5 1171.5,-721.5 1084.5,-721.5"/> +<text text-anchor="middle" x="1128" y="-782.3" font-family="Times,serif" font-size="14.00">GenoData</text> +<polyline fill="none" stroke="black" points="1084.5,-774.5 1171.5,-774.5 "/> +<text text-anchor="start" x="1092.5" y="-759.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1092.5" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1092.5" y="-729.3" font-family="Times,serif" font-size="14.00">- value</text> +</g> +<!-- node19 --> +<g id="node17" class="node"> +<title>node19</title> +<polygon fill="white" stroke="black" points="2672,-676.5 2672,-842.5 2818,-842.5 2818,-676.5 2672,-676.5"/> +<text text-anchor="middle" x="2745" y="-827.3" font-family="Times,serif" font-size="14.00">GenoFreeze</text> +<polyline fill="none" stroke="black" points="2672,-819.5 2818,-819.5 "/> +<text text-anchor="start" x="2680" y="-804.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2680" y="-789.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="2680" y="-774.3" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="2680" y="-759.3" font-family="Times,serif" font-size="14.00">- ShortName</text> +<text text-anchor="start" x="2680" y="-744.3" font-family="Times,serif" font-size="14.00">- CreateTime</text> +<text text-anchor="start" x="2680" y="-729.3" font-family="Times,serif" font-size="14.00">- public</text> +<text text-anchor="start" x="2680" y="-714.3" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="2680" y="-699.3" font-family="Times,serif" font-size="14.00">- confidentiality</text> +<text text-anchor="start" x="2680" y="-684.3" font-family="Times,serif" font-size="14.00">- AuthorisedUsers</text> +</g> +<!-- node19->node20 --> +<g id="edge8" class="edge"> +<title>node19->node20</title> +<path fill="none" stroke="black" d="M2739.35,-676.23C2731.16,-615.63 2711.24,-534.74 2663,-481 2603,-414.15 2504.21,-379.87 2432.25,-362.91"/> +<polygon fill="black" stroke="black" points="2432.8,-359.45 2422.28,-360.63 2431.24,-366.27 2432.8,-359.45"/> +</g> +<!-- node21 --> +<g id="node19" class="node"> +<title>node21</title> +<polygon fill="white" stroke="black" points="3410.5,-2996 3410.5,-3072 3539.5,-3072 3539.5,-2996 3410.5,-2996"/> +<text text-anchor="middle" x="3475" y="-3056.8" font-family="Times,serif" font-size="14.00">Homologene</text> +<polyline fill="none" stroke="black" points="3410.5,-3049 3539.5,-3049 "/> +<text text-anchor="start" x="3418.5" y="-3033.8" font-family="Times,serif" font-size="14.00">- HomologeneId</text> +<text text-anchor="start" x="3418.5" y="-3018.8" font-family="Times,serif" font-size="14.00">- GeneId</text> +<text text-anchor="start" x="3418.5" y="-3003.8" font-family="Times,serif" font-size="14.00">- TaxonomyId</text> +</g> +<!-- node37 --> +<g id="node31" class="node"> +<title>node37</title> +<polygon fill="white" stroke="black" points="3352,-1780.5 3352,-2861.5 3598,-2861.5 3598,-1780.5 3352,-1780.5"/> +<text text-anchor="middle" x="3475" y="-2846.3" font-family="Times,serif" font-size="14.00">ProbeSet</text> +<polyline fill="none" stroke="black" points="3352,-2838.5 3598,-2838.5 "/> +<text text-anchor="start" x="3360" y="-2823.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3360" y="-2808.3" font-family="Times,serif" font-size="14.00">- ChipId</text> +<text text-anchor="start" x="3360" y="-2793.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="3360" y="-2778.3" font-family="Times,serif" font-size="14.00">- TargetId</text> +<text text-anchor="start" x="3360" y="-2763.3" font-family="Times,serif" font-size="14.00">- Symbol</text> +<text text-anchor="start" x="3360" y="-2748.3" font-family="Times,serif" font-size="14.00">- description</text> +<text text-anchor="start" x="3360" y="-2733.3" font-family="Times,serif" font-size="14.00">- Chr</text> +<text text-anchor="start" x="3360" y="-2718.3" font-family="Times,serif" font-size="14.00">- Mb</text> +<text text-anchor="start" x="3360" y="-2703.3" font-family="Times,serif" font-size="14.00">- Chr_2016</text> +<text text-anchor="start" x="3360" y="-2688.3" font-family="Times,serif" font-size="14.00">- Mb_2016</text> +<text text-anchor="start" x="3360" y="-2673.3" font-family="Times,serif" font-size="14.00">- alias</text> +<text text-anchor="start" x="3360" y="-2658.3" font-family="Times,serif" font-size="14.00">- GeneId</text> +<text text-anchor="start" x="3360" y="-2643.3" font-family="Times,serif" font-size="14.00">- GenbankId</text> +<text text-anchor="start" x="3360" y="-2628.3" font-family="Times,serif" font-size="14.00">- SNP</text> +<text text-anchor="start" x="3360" y="-2613.3" font-family="Times,serif" font-size="14.00">- BlatSeq</text> +<text text-anchor="start" x="3360" y="-2598.3" font-family="Times,serif" font-size="14.00">- TargetSeq</text> +<text text-anchor="start" x="3360" y="-2583.3" font-family="Times,serif" font-size="14.00">- UniGeneId</text> +<text text-anchor="start" x="3360" y="-2568.3" font-family="Times,serif" font-size="14.00">- Strand_Probe</text> +<text text-anchor="start" x="3360" y="-2553.3" font-family="Times,serif" font-size="14.00">- Strand_Gene</text> +<text text-anchor="start" x="3360" y="-2538.3" font-family="Times,serif" font-size="14.00">- OMIM</text> +<text text-anchor="start" x="3360" y="-2523.3" font-family="Times,serif" font-size="14.00">- comments</text> +<text text-anchor="start" x="3360" y="-2508.3" font-family="Times,serif" font-size="14.00">- Probe_set_target_region</text> +<text text-anchor="start" x="3360" y="-2493.3" font-family="Times,serif" font-size="14.00">- Probe_set_specificity</text> +<text text-anchor="start" x="3360" y="-2478.3" font-family="Times,serif" font-size="14.00">- Probe_set_BLAT_score</text> +<text text-anchor="start" x="3360" y="-2463.3" font-family="Times,serif" font-size="14.00">- Probe_set_Blat_Mb_start</text> +<text text-anchor="start" x="3360" y="-2448.3" font-family="Times,serif" font-size="14.00">- Probe_set_Blat_Mb_end</text> +<text text-anchor="start" x="3360" y="-2433.3" font-family="Times,serif" font-size="14.00">- Probe_set_Blat_Mb_start_2016</text> +<text text-anchor="start" x="3360" y="-2418.3" font-family="Times,serif" font-size="14.00">- Probe_set_Blat_Mb_end_2016</text> +<text text-anchor="start" x="3360" y="-2403.3" font-family="Times,serif" font-size="14.00">- Probe_set_strand</text> +<text text-anchor="start" x="3360" y="-2388.3" font-family="Times,serif" font-size="14.00">- Probe_set_Note_by_RW</text> +<text text-anchor="start" x="3360" y="-2373.3" font-family="Times,serif" font-size="14.00">- flag</text> +<text text-anchor="start" x="3360" y="-2358.3" font-family="Times,serif" font-size="14.00">- Symbol_H</text> +<text text-anchor="start" x="3360" y="-2343.3" font-family="Times,serif" font-size="14.00">- description_H</text> +<text text-anchor="start" x="3360" y="-2328.3" font-family="Times,serif" font-size="14.00">- chromosome_H</text> +<text text-anchor="start" x="3360" y="-2313.3" font-family="Times,serif" font-size="14.00">- MB_H</text> +<text text-anchor="start" x="3360" y="-2298.3" font-family="Times,serif" font-size="14.00">- alias_H</text> +<text text-anchor="start" x="3360" y="-2283.3" font-family="Times,serif" font-size="14.00">- GeneId_H</text> +<text text-anchor="start" x="3360" y="-2268.3" font-family="Times,serif" font-size="14.00">- chr_num</text> +<text text-anchor="start" x="3360" y="-2253.3" font-family="Times,serif" font-size="14.00">- name_num</text> +<text text-anchor="start" x="3360" y="-2238.3" font-family="Times,serif" font-size="14.00">- Probe_Target_Description</text> +<text text-anchor="start" x="3360" y="-2223.3" font-family="Times,serif" font-size="14.00">- RefSeq_TranscriptId</text> +<text text-anchor="start" x="3360" y="-2208.3" font-family="Times,serif" font-size="14.00">- ENSEMBLGeneId</text> +<text text-anchor="start" x="3360" y="-2193.3" font-family="Times,serif" font-size="14.00">- Chr_mm8</text> +<text text-anchor="start" x="3360" y="-2178.3" font-family="Times,serif" font-size="14.00">- Mb_mm8</text> +<text text-anchor="start" x="3360" y="-2163.3" font-family="Times,serif" font-size="14.00">- Probe_set_Blat_Mb_start_mm8</text> +<text text-anchor="start" x="3360" y="-2148.3" font-family="Times,serif" font-size="14.00">- Probe_set_Blat_Mb_end_mm8</text> +<text text-anchor="start" x="3360" y="-2133.3" font-family="Times,serif" font-size="14.00">- HomoloGeneID</text> +<text text-anchor="start" x="3360" y="-2118.3" font-family="Times,serif" font-size="14.00">- Biotype_ENS</text> +<text text-anchor="start" x="3360" y="-2103.3" font-family="Times,serif" font-size="14.00">- ProteinID</text> +<text text-anchor="start" x="3360" y="-2088.3" font-family="Times,serif" font-size="14.00">- ProteinName</text> +<text text-anchor="start" x="3360" y="-2073.3" font-family="Times,serif" font-size="14.00">- UniProtID</text> +<text text-anchor="start" x="3360" y="-2058.3" font-family="Times,serif" font-size="14.00">- Flybase_Id</text> +<text text-anchor="start" x="3360" y="-2043.3" font-family="Times,serif" font-size="14.00">- RGD_ID</text> +<text text-anchor="start" x="3360" y="-2028.3" font-family="Times,serif" font-size="14.00">- HMDB_ID</text> +<text text-anchor="start" x="3360" y="-2013.3" font-family="Times,serif" font-size="14.00">- Confidence</text> +<text text-anchor="start" x="3360" y="-1998.3" font-family="Times,serif" font-size="14.00">- ChEBI_ID</text> +<text text-anchor="start" x="3360" y="-1983.3" font-family="Times,serif" font-size="14.00">- ChEMBL_ID</text> +<text text-anchor="start" x="3360" y="-1968.3" font-family="Times,serif" font-size="14.00">- CAS_number</text> +<text text-anchor="start" x="3360" y="-1953.3" font-family="Times,serif" font-size="14.00">- PubChem_ID</text> +<text text-anchor="start" x="3360" y="-1938.3" font-family="Times,serif" font-size="14.00">- ChemSpider_ID</text> +<text text-anchor="start" x="3360" y="-1923.3" font-family="Times,serif" font-size="14.00">- UNII_ID</text> +<text text-anchor="start" x="3360" y="-1908.3" font-family="Times,serif" font-size="14.00">- EC_number</text> +<text text-anchor="start" x="3360" y="-1893.3" font-family="Times,serif" font-size="14.00">- KEGG_ID</text> +<text text-anchor="start" x="3360" y="-1878.3" font-family="Times,serif" font-size="14.00">- Molecular_Weight</text> +<text text-anchor="start" x="3360" y="-1863.3" font-family="Times,serif" font-size="14.00">- Nugowiki_ID</text> +<text text-anchor="start" x="3360" y="-1848.3" font-family="Times,serif" font-size="14.00">- Type</text> +<text text-anchor="start" x="3360" y="-1833.3" font-family="Times,serif" font-size="14.00">- Tissue</text> +<text text-anchor="start" x="3360" y="-1818.3" font-family="Times,serif" font-size="14.00">- PrimaryName</text> +<text text-anchor="start" x="3360" y="-1803.3" font-family="Times,serif" font-size="14.00">- SecondaryNames</text> +<text text-anchor="start" x="3360" y="-1788.3" font-family="Times,serif" font-size="14.00">- PeptideSequence</text> +</g> +<!-- node21->node37 --> +<g id="edge9" class="edge"> +<title>node21->node37</title> +<path fill="none" stroke="black" d="M3475,-2995.77C3475,-2966.92 3475,-2923.23 3475,-2871.69"/> +<polygon fill="none" stroke="black" points="3478.5,-2871.62 3475,-2861.62 3471.5,-2871.62 3478.5,-2871.62"/> +</g> +<!-- node22 --> +<g id="node20" class="node"> +<title>node22</title> +<polygon fill="white" stroke="black" points="2443,-1194.5 2443,-1420.5 2601,-1420.5 2601,-1194.5 2443,-1194.5"/> +<text text-anchor="middle" x="2522" y="-1405.3" font-family="Times,serif" font-size="14.00">InbredSet</text> +<polyline fill="none" stroke="black" points="2443,-1397.5 2601,-1397.5 "/> +<text text-anchor="start" x="2451" y="-1382.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2451" y="-1367.3" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="2451" y="-1352.3" font-family="Times,serif" font-size="14.00">- InbredSetName</text> +<text text-anchor="start" x="2451" y="-1337.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="2451" y="-1322.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="2451" y="-1307.3" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="2451" y="-1292.3" font-family="Times,serif" font-size="14.00">- public</text> +<text text-anchor="start" x="2451" y="-1277.3" font-family="Times,serif" font-size="14.00">- MappingMethodId</text> +<text text-anchor="start" x="2451" y="-1262.3" font-family="Times,serif" font-size="14.00">- GeneticType</text> +<text text-anchor="start" x="2451" y="-1247.3" font-family="Times,serif" font-size="14.00">- Family</text> +<text text-anchor="start" x="2451" y="-1232.3" font-family="Times,serif" font-size="14.00">- FamilyOrder</text> +<text text-anchor="start" x="2451" y="-1217.3" font-family="Times,serif" font-size="14.00">- MenuOrderId</text> +<text text-anchor="start" x="2451" y="-1202.3" font-family="Times,serif" font-size="14.00">- InbredSetCode</text> +</g> +<!-- node22->node5 --> +<g id="edge10" class="edge"> +<title>node22->node5</title> +<path fill="none" stroke="black" d="M2442.8,-1225.71C2391.74,-1176.97 2322.01,-1116.33 2252,-1074 2214.78,-1051.5 2191.28,-1069.23 2161,-1038 2101.31,-976.45 2076.93,-876.71 2067.19,-815.06"/> +<polygon fill="black" stroke="black" points="2070.65,-814.5 2065.7,-805.13 2063.73,-815.54 2070.65,-814.5"/> +</g> +<!-- node22->node19 --> +<g id="edge11" class="edge"> +<title>node22->node19</title> +<path fill="none" stroke="black" d="M2548.33,-1194.49C2561.76,-1153.65 2581.29,-1108.95 2609,-1074 2626.92,-1051.4 2645.89,-1061.22 2663,-1038 2702.93,-983.81 2723.53,-910.32 2734.09,-852.58"/> +<polygon fill="none" stroke="black" points="2737.54,-853.18 2735.82,-842.72 2730.64,-851.97 2737.54,-853.18"/> +</g> +<!-- node45 --> +<g id="node39" class="node"> +<title>node45</title> +<polygon fill="white" stroke="black" points="2836,-676.5 2836,-842.5 2982,-842.5 2982,-676.5 2836,-676.5"/> +<text text-anchor="middle" x="2909" y="-827.3" font-family="Times,serif" font-size="14.00">PublishFreeze</text> +<polyline fill="none" stroke="black" points="2836,-819.5 2982,-819.5 "/> +<text text-anchor="start" x="2844" y="-804.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2844" y="-789.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="2844" y="-774.3" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="2844" y="-759.3" font-family="Times,serif" font-size="14.00">- ShortName</text> +<text text-anchor="start" x="2844" y="-744.3" font-family="Times,serif" font-size="14.00">- CreateTime</text> +<text text-anchor="start" x="2844" y="-729.3" font-family="Times,serif" font-size="14.00">- public</text> +<text text-anchor="start" x="2844" y="-714.3" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="2844" y="-699.3" font-family="Times,serif" font-size="14.00">- confidentiality</text> +<text text-anchor="start" x="2844" y="-684.3" font-family="Times,serif" font-size="14.00">- AuthorisedUsers</text> +</g> +<!-- node22->node45 --> +<g id="edge12" class="edge"> +<title>node22->node45</title> +<path fill="none" stroke="black" d="M2539.14,-1194.37C2551.46,-1150.63 2572.63,-1103.91 2609,-1074 2684.85,-1011.63 2753.4,-1103.02 2827,-1038 2879.25,-991.84 2898.95,-914.18 2906.03,-852.74"/> +<polygon fill="none" stroke="black" points="2909.53,-852.95 2907.1,-842.63 2902.57,-852.21 2909.53,-852.95"/> +</g> +<!-- node47 --> +<g id="node41" class="node"> +<title>node47</title> +<polygon fill="white" stroke="black" points="3000,-661.5 3000,-857.5 3120,-857.5 3120,-661.5 3000,-661.5"/> +<text text-anchor="middle" x="3060" y="-842.3" font-family="Times,serif" font-size="14.00">PublishXRef</text> +<polyline fill="none" stroke="black" points="3000,-834.5 3120,-834.5 "/> +<text text-anchor="start" x="3008" y="-819.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3008" y="-804.3" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="3008" y="-789.3" font-family="Times,serif" font-size="14.00">- PhenotypeId</text> +<text text-anchor="start" x="3008" y="-774.3" font-family="Times,serif" font-size="14.00">- PublicationId</text> +<text text-anchor="start" x="3008" y="-759.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="3008" y="-744.3" font-family="Times,serif" font-size="14.00">- mean</text> +<text text-anchor="start" x="3008" y="-729.3" font-family="Times,serif" font-size="14.00">- Locus</text> +<text text-anchor="start" x="3008" y="-714.3" font-family="Times,serif" font-size="14.00">- LRS</text> +<text text-anchor="start" x="3008" y="-699.3" font-family="Times,serif" font-size="14.00">- additive</text> +<text text-anchor="start" x="3008" y="-684.3" font-family="Times,serif" font-size="14.00">- Sequence</text> +<text text-anchor="start" x="3008" y="-669.3" font-family="Times,serif" font-size="14.00">- comments</text> +</g> +<!-- node22->node47 --> +<g id="edge13" class="edge"> +<title>node22->node47</title> +<path fill="none" stroke="black" d="M2537.8,-1194.31C2549.9,-1150.01 2571.27,-1102.88 2609,-1074 2676.7,-1022.17 2926.37,-1093.61 2991,-1038 3039.29,-996.45 3056.51,-926.83 3061.67,-867.71"/> +<polygon fill="black" stroke="black" points="3065.17,-867.81 3062.44,-857.57 3058.19,-867.27 3065.17,-867.81"/> +</g> +<!-- node51 --> +<g id="node45" class="node"> +<title>node51</title> +<polygon fill="white" stroke="black" points="2170,-706.5 2170,-812.5 2328,-812.5 2328,-706.5 2170,-706.5"/> +<text text-anchor="middle" x="2249" y="-797.3" font-family="Times,serif" font-size="14.00">StrainXRef</text> +<polyline fill="none" stroke="black" points="2170,-789.5 2328,-789.5 "/> +<text text-anchor="start" x="2178" y="-774.3" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="2178" y="-759.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="2178" y="-744.3" font-family="Times,serif" font-size="14.00">- OrderId</text> +<text text-anchor="start" x="2178" y="-729.3" font-family="Times,serif" font-size="14.00">- Used_for_mapping</text> +<text text-anchor="start" x="2178" y="-714.3" font-family="Times,serif" font-size="14.00">- PedigreeStatus</text> +</g> +<!-- node22->node51 --> +<g id="edge14" class="edge"> +<title>node22->node51</title> +<path fill="none" stroke="black" d="M2442.9,-1206.97C2406.91,-1158.16 2365.99,-1097.23 2337,-1038 2302.47,-967.45 2277.43,-880.28 2263.09,-822.68"/> +<polygon fill="black" stroke="black" points="2266.4,-821.51 2260.62,-812.63 2259.6,-823.18 2266.4,-821.51"/> +</g> +<!-- node54 --> +<g id="node46" class="node"> +<title>node54</title> +<polygon fill="white" stroke="black" points="2520,-684 2520,-835 2654,-835 2654,-684 2520,-684"/> +<text text-anchor="middle" x="2587" y="-819.8" font-family="Times,serif" font-size="14.00">Temp</text> +<polyline fill="none" stroke="black" points="2520,-812 2654,-812 "/> +<text text-anchor="start" x="2528" y="-796.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2528" y="-781.8" font-family="Times,serif" font-size="14.00">- dbdisplayname</text> +<text text-anchor="start" x="2528" y="-766.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="2528" y="-751.8" font-family="Times,serif" font-size="14.00">- description</text> +<text text-anchor="start" x="2528" y="-736.8" font-family="Times,serif" font-size="14.00">- createtime</text> +<text text-anchor="start" x="2528" y="-721.8" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="2528" y="-706.8" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +<text text-anchor="start" x="2528" y="-691.8" font-family="Times,serif" font-size="14.00">- IP</text> +</g> +<!-- node22->node54 --> +<g id="edge15" class="edge"> +<title>node22->node54</title> +<path fill="none" stroke="black" d="M2535.35,-1194.36C2547.68,-1090.78 2565.73,-939.17 2576.9,-845.33"/> +<polygon fill="black" stroke="black" points="2580.39,-845.65 2578.09,-835.31 2573.44,-844.82 2580.39,-845.65"/> +</g> +<!-- node23 --> +<g id="node21" class="node"> +<title>node23</title> +<polygon fill="white" stroke="black" points="950.5,-1194.5 950.5,-1420.5 1083.5,-1420.5 1083.5,-1194.5 950.5,-1194.5"/> +<text text-anchor="middle" x="1017" y="-1405.3" font-family="Times,serif" font-size="14.00">IndelAll</text> +<polyline fill="none" stroke="black" points="950.5,-1397.5 1083.5,-1397.5 "/> +<text text-anchor="start" x="958.5" y="-1382.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="958.5" y="-1367.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="958.5" y="-1352.3" font-family="Times,serif" font-size="14.00">- SourceId</text> +<text text-anchor="start" x="958.5" y="-1337.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="958.5" y="-1322.3" font-family="Times,serif" font-size="14.00">- Chromosome</text> +<text text-anchor="start" x="958.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- Mb_start</text> +<text text-anchor="start" x="958.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- Mb_start_2016</text> +<text text-anchor="start" x="958.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- Strand</text> +<text text-anchor="start" x="958.5" y="-1262.3" font-family="Times,serif" font-size="14.00">- Type</text> +<text text-anchor="start" x="958.5" y="-1247.3" font-family="Times,serif" font-size="14.00">- Mb_end</text> +<text text-anchor="start" x="958.5" y="-1232.3" font-family="Times,serif" font-size="14.00">- Mb_end_2016</text> +<text text-anchor="start" x="958.5" y="-1217.3" font-family="Times,serif" font-size="14.00">- Size</text> +<text text-anchor="start" x="958.5" y="-1202.3" font-family="Times,serif" font-size="14.00">- InDelSequence</text> +</g> +<!-- node24 --> +<g id="node22" class="node"> +<title>node24</title> +<polygon fill="white" stroke="black" points="484.5,-721.5 484.5,-797.5 577.5,-797.5 577.5,-721.5 484.5,-721.5"/> +<text text-anchor="middle" x="531" y="-782.3" font-family="Times,serif" font-size="14.00">IndelXRef</text> +<polyline fill="none" stroke="black" points="484.5,-774.5 577.5,-774.5 "/> +<text text-anchor="start" x="492.5" y="-759.3" font-family="Times,serif" font-size="14.00">- IndelId</text> +<text text-anchor="start" x="492.5" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId1</text> +<text text-anchor="start" x="492.5" y="-729.3" font-family="Times,serif" font-size="14.00">- StrainId2</text> +</g> +<!-- node23->node24 --> +<g id="edge16" class="edge"> +<title>node23->node24</title> +<path fill="none" stroke="black" d="M1006.53,-1194.48C996.53,-1150.35 977.38,-1103.3 941,-1074 879.42,-1024.4 645.58,-1091.11 587,-1038 522.85,-979.83 520.48,-870.29 525.23,-807.63"/> +<polygon fill="black" stroke="black" points="528.72,-807.89 526.08,-797.62 521.75,-807.29 528.72,-807.89"/> +</g> +<!-- node27 --> +<g id="node23" class="node"> +<title>node27</title> +<polygon fill="white" stroke="black" points="2455,-1630 2455,-1691 2589,-1691 2589,-1630 2455,-1630"/> +<text text-anchor="middle" x="2522" y="-1675.8" font-family="Times,serif" font-size="14.00">MappingMethod</text> +<polyline fill="none" stroke="black" points="2455,-1668 2589,-1668 "/> +<text text-anchor="start" x="2463" y="-1652.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2463" y="-1637.8" font-family="Times,serif" font-size="14.00">- Name</text> +</g> +<!-- node27->node22 --> +<g id="edge17" class="edge"> +<title>node27->node22</title> +<path fill="none" stroke="black" d="M2522,-1629.88C2522,-1586.24 2522,-1502.15 2522,-1430.93"/> +<polygon fill="none" stroke="black" points="2525.5,-1430.53 2522,-1420.53 2518.5,-1430.53 2525.5,-1430.53"/> +</g> +<!-- node28 --> +<g id="node24" class="node"> +<title>node28</title> +<polygon fill="white" stroke="black" points="1190,-721.5 1190,-797.5 1274,-797.5 1274,-721.5 1190,-721.5"/> +<text text-anchor="middle" x="1232" y="-782.3" font-family="Times,serif" font-size="14.00">NStrain</text> +<polyline fill="none" stroke="black" points="1190,-774.5 1274,-774.5 "/> +<text text-anchor="start" x="1198" y="-759.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="1198" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1198" y="-729.3" font-family="Times,serif" font-size="14.00">- count</text> +</g> +<!-- node31 --> +<g id="node25" class="node"> +<title>node31</title> +<polygon fill="white" stroke="black" points="2618.5,-1209.5 2618.5,-1405.5 2857.5,-1405.5 2857.5,-1209.5 2618.5,-1209.5"/> +<text text-anchor="middle" x="2738" y="-1390.3" font-family="Times,serif" font-size="14.00">Phenotype</text> +<polyline fill="none" stroke="black" points="2618.5,-1382.5 2857.5,-1382.5 "/> +<text text-anchor="start" x="2626.5" y="-1367.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2626.5" y="-1352.3" font-family="Times,serif" font-size="14.00">- Pre_publication_description</text> +<text text-anchor="start" x="2626.5" y="-1337.3" font-family="Times,serif" font-size="14.00">- Post_publication_description</text> +<text text-anchor="start" x="2626.5" y="-1322.3" font-family="Times,serif" font-size="14.00">- Original_description</text> +<text text-anchor="start" x="2626.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- Units</text> +<text text-anchor="start" x="2626.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- Pre_publication_abbreviation</text> +<text text-anchor="start" x="2626.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- Post_publication_abbreviation</text> +<text text-anchor="start" x="2626.5" y="-1262.3" font-family="Times,serif" font-size="14.00">- Lab_code</text> +<text text-anchor="start" x="2626.5" y="-1247.3" font-family="Times,serif" font-size="14.00">- Submitter</text> +<text text-anchor="start" x="2626.5" y="-1232.3" font-family="Times,serif" font-size="14.00">- Owner</text> +<text text-anchor="start" x="2626.5" y="-1217.3" font-family="Times,serif" font-size="14.00">- Authorized_Users</text> +</g> +<!-- node31->node47 --> +<g id="edge19" class="edge"> +<title>node31->node47</title> +<path fill="none" stroke="black" d="M2771.49,-1209.49C2792.26,-1162.46 2823.43,-1108.76 2867,-1074 2911.86,-1038.21 2951.22,-1079.36 2991,-1038 3034.34,-992.94 3051.74,-925.06 3058.23,-867.71"/> +<polygon fill="black" stroke="black" points="3061.74,-867.81 3059.28,-857.5 3054.77,-867.09 3061.74,-867.81"/> +</g> +<!-- node32 --> +<g id="node26" class="node"> +<title>node32</title> +<polygon fill="white" stroke="black" points="3326,-1577.5 3326,-1743.5 3436,-1743.5 3436,-1577.5 3326,-1577.5"/> +<text text-anchor="middle" x="3381" y="-1728.3" font-family="Times,serif" font-size="14.00">Probe</text> +<polyline fill="none" stroke="black" points="3326,-1720.5 3436,-1720.5 "/> +<text text-anchor="start" x="3334" y="-1705.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3334" y="-1690.3" font-family="Times,serif" font-size="14.00">- ProbeSetId</text> +<text text-anchor="start" x="3334" y="-1675.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="3334" y="-1660.3" font-family="Times,serif" font-size="14.00">- Sequence</text> +<text text-anchor="start" x="3334" y="-1645.3" font-family="Times,serif" font-size="14.00">- ExonNo</text> +<text text-anchor="start" x="3334" y="-1630.3" font-family="Times,serif" font-size="14.00">- SerialOrder</text> +<text text-anchor="start" x="3334" y="-1615.3" font-family="Times,serif" font-size="14.00">- Tm</text> +<text text-anchor="start" x="3334" y="-1600.3" font-family="Times,serif" font-size="14.00">- E_GSB</text> +<text text-anchor="start" x="3334" y="-1585.3" font-family="Times,serif" font-size="14.00">- E_NSB</text> +</g> +<!-- node35 --> +<g id="node29" class="node"> +<title>node35</title> +<polygon fill="white" stroke="black" points="3315.5,-1262 3315.5,-1353 3446.5,-1353 3446.5,-1262 3315.5,-1262"/> +<text text-anchor="middle" x="3381" y="-1337.8" font-family="Times,serif" font-size="14.00">ProbeH2</text> +<polyline fill="none" stroke="black" points="3315.5,-1330 3446.5,-1330 "/> +<text text-anchor="start" x="3323.5" y="-1314.8" font-family="Times,serif" font-size="14.00">- ProbeFreezeId</text> +<text text-anchor="start" x="3323.5" y="-1299.8" font-family="Times,serif" font-size="14.00">- ProbeId</text> +<text text-anchor="start" x="3323.5" y="-1284.8" font-family="Times,serif" font-size="14.00">- h2</text> +<text text-anchor="start" x="3323.5" y="-1269.8" font-family="Times,serif" font-size="14.00">- weight</text> +</g> +<!-- node32->node35 --> +<g id="edge20" class="edge"> +<title>node32->node35</title> +<path fill="none" stroke="black" d="M3381,-1577.21C3381,-1511.4 3381,-1420.95 3381,-1363.61"/> +<polygon fill="black" stroke="black" points="3384.5,-1363.3 3381,-1353.3 3377.5,-1363.3 3384.5,-1363.3"/> +</g> +<!-- node42 --> +<g id="node36" class="node"> +<title>node42</title> +<polygon fill="white" stroke="black" points="3166.5,-1269.5 3166.5,-1345.5 3297.5,-1345.5 3297.5,-1269.5 3166.5,-1269.5"/> +<text text-anchor="middle" x="3232" y="-1330.3" font-family="Times,serif" font-size="14.00">ProbeXRef</text> +<polyline fill="none" stroke="black" points="3166.5,-1322.5 3297.5,-1322.5 "/> +<text text-anchor="start" x="3174.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- ProbeFreezeId</text> +<text text-anchor="start" x="3174.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- ProbeId</text> +<text text-anchor="start" x="3174.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- DataId</text> +</g> +<!-- node32->node42 --> +<g id="edge21" class="edge"> +<title>node32->node42</title> +<path fill="none" stroke="black" d="M3325.94,-1578.48C3318.71,-1566.2 3311.81,-1553.47 3306,-1541 3277.26,-1479.35 3255.46,-1403.56 3243.2,-1355.63"/> +<polygon fill="black" stroke="black" points="3246.57,-1354.68 3240.73,-1345.84 3239.78,-1356.39 3246.57,-1354.68"/> +</g> +<!-- node33 --> +<g id="node27" class="node"> +<title>node33</title> +<polygon fill="white" stroke="black" points="1292,-721.5 1292,-797.5 1384,-797.5 1384,-721.5 1292,-721.5"/> +<text text-anchor="middle" x="1338" y="-782.3" font-family="Times,serif" font-size="14.00">ProbeData</text> +<polyline fill="none" stroke="black" points="1292,-774.5 1384,-774.5 "/> +<text text-anchor="start" x="1300" y="-759.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1300" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1300" y="-729.3" font-family="Times,serif" font-size="14.00">- value</text> +</g> +<!-- node34 --> +<g id="node28" class="node"> +<title>node34</title> +<polygon fill="white" stroke="black" points="3087.5,-1577.5 3087.5,-1743.5 3218.5,-1743.5 3218.5,-1577.5 3087.5,-1577.5"/> +<text text-anchor="middle" x="3153" y="-1728.3" font-family="Times,serif" font-size="14.00">ProbeFreeze</text> +<polyline fill="none" stroke="black" points="3087.5,-1720.5 3218.5,-1720.5 "/> +<text text-anchor="start" x="3095.5" y="-1705.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3095.5" y="-1690.3" font-family="Times,serif" font-size="14.00">- ProbeFreezeId</text> +<text text-anchor="start" x="3095.5" y="-1675.3" font-family="Times,serif" font-size="14.00">- ChipId</text> +<text text-anchor="start" x="3095.5" y="-1660.3" font-family="Times,serif" font-size="14.00">- TissueId</text> +<text text-anchor="start" x="3095.5" y="-1645.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="3095.5" y="-1630.3" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="3095.5" y="-1615.3" font-family="Times,serif" font-size="14.00">- ShortName</text> +<text text-anchor="start" x="3095.5" y="-1600.3" font-family="Times,serif" font-size="14.00">- CreateTime</text> +<text text-anchor="start" x="3095.5" y="-1585.3" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +</g> +<!-- node34->node35 --> +<g id="edge22" class="edge"> +<title>node34->node35</title> +<path fill="none" stroke="black" d="M3218.59,-1621.61C3248.94,-1601.16 3283.23,-1573.45 3306,-1541 3343.84,-1487.08 3363.37,-1413.02 3372.88,-1363.1"/> +<polygon fill="black" stroke="black" points="3376.34,-1363.6 3374.7,-1353.13 3369.46,-1362.34 3376.34,-1363.6"/> +</g> +<!-- node39 --> +<g id="node33" class="node"> +<title>node39</title> +<polygon fill="white" stroke="black" points="3002,-1194.5 3002,-1420.5 3148,-1420.5 3148,-1194.5 3002,-1194.5"/> +<text text-anchor="middle" x="3075" y="-1405.3" font-family="Times,serif" font-size="14.00">ProbeSetFreeze</text> +<polyline fill="none" stroke="black" points="3002,-1397.5 3148,-1397.5 "/> +<text text-anchor="start" x="3010" y="-1382.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="3010" y="-1367.3" font-family="Times,serif" font-size="14.00">- ProbeFreezeId</text> +<text text-anchor="start" x="3010" y="-1352.3" font-family="Times,serif" font-size="14.00">- AvgID</text> +<text text-anchor="start" x="3010" y="-1337.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="3010" y="-1322.3" font-family="Times,serif" font-size="14.00">- Name2</text> +<text text-anchor="start" x="3010" y="-1307.3" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="3010" y="-1292.3" font-family="Times,serif" font-size="14.00">- ShortName</text> +<text text-anchor="start" x="3010" y="-1277.3" font-family="Times,serif" font-size="14.00">- CreateTime</text> +<text text-anchor="start" x="3010" y="-1262.3" font-family="Times,serif" font-size="14.00">- OrderList</text> +<text text-anchor="start" x="3010" y="-1247.3" font-family="Times,serif" font-size="14.00">- public</text> +<text text-anchor="start" x="3010" y="-1232.3" font-family="Times,serif" font-size="14.00">- confidentiality</text> +<text text-anchor="start" x="3010" y="-1217.3" font-family="Times,serif" font-size="14.00">- AuthorisedUsers</text> +<text text-anchor="start" x="3010" y="-1202.3" font-family="Times,serif" font-size="14.00">- DataScale</text> +</g> +<!-- node34->node39 --> +<g id="edge23" class="edge"> +<title>node34->node39</title> +<path fill="none" stroke="black" d="M3134.71,-1577.21C3125,-1533.51 3112.88,-1478.96 3102.1,-1430.44"/> +<polygon fill="black" stroke="black" points="3105.48,-1429.51 3099.89,-1420.51 3098.64,-1431.03 3105.48,-1429.51"/> +</g> +<!-- node34->node42 --> +<g id="edge24" class="edge"> +<title>node34->node42</title> +<path fill="none" stroke="black" d="M3171.52,-1577.21C3187.05,-1508.2 3208.68,-1412.11 3221.42,-1355.5"/> +<polygon fill="black" stroke="black" points="3224.84,-1356.27 3223.62,-1345.74 3218.01,-1354.73 3224.84,-1356.27"/> +</g> +<!-- node36 --> +<g id="node30" class="node"> +<title>node36</title> +<polygon fill="white" stroke="black" points="1402,-721.5 1402,-797.5 1486,-797.5 1486,-721.5 1402,-721.5"/> +<text text-anchor="middle" x="1444" y="-782.3" font-family="Times,serif" font-size="14.00">ProbeSE</text> +<polyline fill="none" stroke="black" points="1402,-774.5 1486,-774.5 "/> +<text text-anchor="start" x="1410" y="-759.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="1410" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1410" y="-729.3" font-family="Times,serif" font-size="14.00">- error</text> +</g> +<!-- node37->node32 --> +<g id="edge25" class="edge"> +<title>node37->node32</title> +<path fill="none" stroke="black" d="M3397.97,-1780.37C3396.64,-1771.07 3395.37,-1762.15 3394.16,-1753.68"/> +<polygon fill="black" stroke="black" points="3397.59,-1752.98 3392.72,-1743.58 3390.66,-1753.97 3397.59,-1752.98"/> +</g> +<!-- node41 --> +<g id="node35" class="node"> +<title>node41</title> +<polygon fill="white" stroke="black" points="3202.5,-646.5 3202.5,-872.5 3357.5,-872.5 3357.5,-646.5 3202.5,-646.5"/> +<text text-anchor="middle" x="3280" y="-857.3" font-family="Times,serif" font-size="14.00">ProbeSetXRef</text> +<polyline fill="none" stroke="black" points="3202.5,-849.5 3357.5,-849.5 "/> +<text text-anchor="start" x="3210.5" y="-834.3" font-family="Times,serif" font-size="14.00">- ProbeSetFreezeId</text> +<text text-anchor="start" x="3210.5" y="-819.3" font-family="Times,serif" font-size="14.00">- ProbeSetId</text> +<text text-anchor="start" x="3210.5" y="-804.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="3210.5" y="-789.3" font-family="Times,serif" font-size="14.00">- Locus_old</text> +<text text-anchor="start" x="3210.5" y="-774.3" font-family="Times,serif" font-size="14.00">- LRS_old</text> +<text text-anchor="start" x="3210.5" y="-759.3" font-family="Times,serif" font-size="14.00">- pValue_old</text> +<text text-anchor="start" x="3210.5" y="-744.3" font-family="Times,serif" font-size="14.00">- mean</text> +<text text-anchor="start" x="3210.5" y="-729.3" font-family="Times,serif" font-size="14.00">- se</text> +<text text-anchor="start" x="3210.5" y="-714.3" font-family="Times,serif" font-size="14.00">- Locus</text> +<text text-anchor="start" x="3210.5" y="-699.3" font-family="Times,serif" font-size="14.00">- LRS</text> +<text text-anchor="start" x="3210.5" y="-684.3" font-family="Times,serif" font-size="14.00">- pValue</text> +<text text-anchor="start" x="3210.5" y="-669.3" font-family="Times,serif" font-size="14.00">- additive</text> +<text text-anchor="start" x="3210.5" y="-654.3" font-family="Times,serif" font-size="14.00">- h2</text> +</g> +<!-- node37->node41 --> +<g id="edge26" class="edge"> +<title>node37->node41</title> +<path fill="none" stroke="black" d="M3478.52,-1780.31C3478.33,-1476.13 3473.65,-1143.37 3455,-1074 3436.26,-1004.29 3398.67,-933.5 3363.11,-876.86"/> +<polygon fill="black" stroke="black" points="3365.96,-874.83 3357.65,-868.26 3360.05,-878.58 3365.96,-874.83"/> +</g> +<!-- node60 --> +<g id="node52" class="node"> +<title>node60</title> +<polygon fill="white" stroke="black" points="3603,-0.5 3603,-211.5 3813,-211.5 3813,-0.5 3603,-0.5"/> +<text text-anchor="middle" x="3708" y="-196.3" font-family="Times,serif" font-size="14.00">TissueProbeSetXRef</text> +<polyline fill="none" stroke="black" points="3603,-188.5 3813,-188.5 "/> +<text text-anchor="start" x="3611" y="-173.3" font-family="Times,serif" font-size="14.00">- TissueProbeSetFreezeId</text> +<text text-anchor="start" x="3611" y="-158.3" font-family="Times,serif" font-size="14.00">- ProbesetId</text> +<text text-anchor="start" x="3611" y="-143.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="3611" y="-128.3" font-family="Times,serif" font-size="14.00">- Mean</text> +<text text-anchor="start" x="3611" y="-113.3" font-family="Times,serif" font-size="14.00">- useStatus</text> +<text text-anchor="start" x="3611" y="-98.3" font-family="Times,serif" font-size="14.00">- Symbol</text> +<text text-anchor="start" x="3611" y="-83.3" font-family="Times,serif" font-size="14.00">- GeneId</text> +<text text-anchor="start" x="3611" y="-68.3" font-family="Times,serif" font-size="14.00">- Chr</text> +<text text-anchor="start" x="3611" y="-53.3" font-family="Times,serif" font-size="14.00">- Mb</text> +<text text-anchor="start" x="3611" y="-38.3" font-family="Times,serif" font-size="14.00">- Mb_2016</text> +<text text-anchor="start" x="3611" y="-23.3" font-family="Times,serif" font-size="14.00">- description</text> +<text text-anchor="start" x="3611" y="-8.3" font-family="Times,serif" font-size="14.00">- Probe_Target_Description</text> +</g> +<!-- node37->node60 --> +<g id="edge27" class="edge"> +<title>node37->node60</title> +<path fill="none" stroke="black" d="M3598.18,-1788.55C3601.06,-1785.64 3604,-1782.79 3607,-1780 4072.64,-1346.72 4591.07,-2012.47 5018,-1541 5087.52,-1464.22 5034,-1412.08 5034,-1308.5 5034,-1308.5 5034,-1308.5 5034,-758.5 5034,-634.96 5095.21,-577.44 5018,-481 4866.15,-291.35 4114.38,-165.23 3823.35,-122.81"/> +<polygon fill="black" stroke="black" points="3823.59,-119.31 3813.19,-121.34 3822.58,-126.24 3823.59,-119.31"/> +</g> +<!-- node38 --> +<g id="node32" class="node"> +<title>node38</title> +<polygon fill="white" stroke="black" points="1676,-721.5 1676,-797.5 1792,-797.5 1792,-721.5 1676,-721.5"/> +<text text-anchor="middle" x="1734" y="-782.3" font-family="Times,serif" font-size="14.00">ProbeSetData</text> +<polyline fill="none" stroke="black" points="1676,-774.5 1792,-774.5 "/> +<text text-anchor="start" x="1684" y="-759.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1684" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1684" y="-729.3" font-family="Times,serif" font-size="14.00">- value</text> +</g> +<!-- node39->node4 --> +<g id="edge28" class="edge"> +<title>node39->node4</title> +<path fill="none" stroke="black" d="M3062.04,-1194.41C3050.97,-1149.99 3030.56,-1102.74 2993,-1074 2907.7,-1008.73 2595.14,-1104.76 2511,-1038 2443.84,-984.71 2427.5,-880.03 2424.11,-815.58"/> +<polygon fill="black" stroke="black" points="2427.59,-815.04 2423.65,-805.2 2420.59,-815.35 2427.59,-815.04"/> +</g> +<!-- node39->node41 --> +<g id="edge29" class="edge"> +<title>node39->node41</title> +<path fill="none" stroke="black" d="M3113.63,-1194.46C3127.07,-1156.15 3142.44,-1113.11 3157,-1074 3180.68,-1010.42 3208.16,-940.07 3231.14,-882.14"/> +<polygon fill="black" stroke="black" points="3234.49,-883.17 3234.93,-872.59 3227.99,-880.59 3234.49,-883.17"/> +</g> +<!-- node63 --> +<g id="node56" class="node"> +<title>node63</title> +<polygon fill="white" stroke="black" points="3867,-721.5 3867,-797.5 4045,-797.5 4045,-721.5 3867,-721.5"/> +<text text-anchor="middle" x="3956" y="-782.3" font-family="Times,serif" font-size="14.00">UserPrivilege</text> +<polyline fill="none" stroke="black" points="3867,-774.5 4045,-774.5 "/> +<text text-anchor="start" x="3875" y="-759.3" font-family="Times,serif" font-size="14.00">- UserId</text> +<text text-anchor="start" x="3875" y="-744.3" font-family="Times,serif" font-size="14.00">- ProbeSetFreezeId</text> +<text text-anchor="start" x="3875" y="-729.3" font-family="Times,serif" font-size="14.00">- download_result_priv</text> +</g> +<!-- node39->node63 --> +<g id="edge30" class="edge"> +<title>node39->node63</title> +<path fill="none" stroke="black" d="M3089.8,-1194.33C3101.19,-1150.71 3121.35,-1104.1 3157,-1074 3229.02,-1013.2 3276.1,-1066.31 3366,-1038 3560.8,-976.65 3774.09,-863.93 3883.04,-802.73"/> +<polygon fill="black" stroke="black" points="3884.98,-805.65 3891.98,-797.69 3881.55,-799.55 3884.98,-805.65"/> +</g> +<!-- node40 --> +<g id="node34" class="node"> +<title>node40</title> +<polygon fill="white" stroke="black" points="1810.5,-721.5 1810.5,-797.5 1913.5,-797.5 1913.5,-721.5 1810.5,-721.5"/> +<text text-anchor="middle" x="1862" y="-782.3" font-family="Times,serif" font-size="14.00">ProbeSetSE</text> +<polyline fill="none" stroke="black" points="1810.5,-774.5 1913.5,-774.5 "/> +<text text-anchor="start" x="1818.5" y="-759.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="1818.5" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1818.5" y="-729.3" font-family="Times,serif" font-size="14.00">- error</text> +</g> +<!-- node43 --> +<g id="node37" class="node"> +<title>node43</title> +<polygon fill="white" stroke="black" points="2876,-1217 2876,-1398 2984,-1398 2984,-1217 2876,-1217"/> +<text text-anchor="middle" x="2930" y="-1382.8" font-family="Times,serif" font-size="14.00">Publication</text> +<polyline fill="none" stroke="black" points="2876,-1375 2984,-1375 "/> +<text text-anchor="start" x="2884" y="-1359.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="2884" y="-1344.8" font-family="Times,serif" font-size="14.00">- PubMed_ID</text> +<text text-anchor="start" x="2884" y="-1329.8" font-family="Times,serif" font-size="14.00">- Abstract</text> +<text text-anchor="start" x="2884" y="-1314.8" font-family="Times,serif" font-size="14.00">- Authors</text> +<text text-anchor="start" x="2884" y="-1299.8" font-family="Times,serif" font-size="14.00">- Title</text> +<text text-anchor="start" x="2884" y="-1284.8" font-family="Times,serif" font-size="14.00">- Journal</text> +<text text-anchor="start" x="2884" y="-1269.8" font-family="Times,serif" font-size="14.00">- Volume</text> +<text text-anchor="start" x="2884" y="-1254.8" font-family="Times,serif" font-size="14.00">- Pages</text> +<text text-anchor="start" x="2884" y="-1239.8" font-family="Times,serif" font-size="14.00">- Month</text> +<text text-anchor="start" x="2884" y="-1224.8" font-family="Times,serif" font-size="14.00">- Year</text> +</g> +<!-- node43->node47 --> +<g id="edge31" class="edge"> +<title>node43->node47</title> +<path fill="none" stroke="black" d="M2951.32,-1216.95C2974.08,-1121.36 3010.14,-969.91 3034.42,-867.95"/> +<polygon fill="black" stroke="black" points="3037.89,-868.47 3036.8,-857.93 3031.08,-866.85 3037.89,-868.47"/> +</g> +<!-- node44 --> +<g id="node38" class="node"> +<title>node44</title> +<polygon fill="white" stroke="black" points="596,-721.5 596,-797.5 700,-797.5 700,-721.5 596,-721.5"/> +<text text-anchor="middle" x="648" y="-782.3" font-family="Times,serif" font-size="14.00">PublishData</text> +<polyline fill="none" stroke="black" points="596,-774.5 700,-774.5 "/> +<text text-anchor="start" x="604" y="-759.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="604" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="604" y="-729.3" font-family="Times,serif" font-size="14.00">- value</text> +</g> +<!-- node46 --> +<g id="node40" class="node"> +<title>node46</title> +<polygon fill="white" stroke="black" points="718,-721.5 718,-797.5 808,-797.5 808,-721.5 718,-721.5"/> +<text text-anchor="middle" x="763" y="-782.3" font-family="Times,serif" font-size="14.00">PublishSE</text> +<polyline fill="none" stroke="black" points="718,-774.5 808,-774.5 "/> +<text text-anchor="start" x="726" y="-759.3" font-family="Times,serif" font-size="14.00">- DataId</text> +<text text-anchor="start" x="726" y="-744.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="726" y="-729.3" font-family="Times,serif" font-size="14.00">- error</text> +</g> +<!-- node48 --> +<g id="node42" class="node"> +<title>node48</title> +<polygon fill="white" stroke="black" points="723.5,-1074.5 723.5,-1540.5 932.5,-1540.5 932.5,-1074.5 723.5,-1074.5"/> +<text text-anchor="middle" x="828" y="-1525.3" font-family="Times,serif" font-size="14.00">SnpAll</text> +<polyline fill="none" stroke="black" points="723.5,-1517.5 932.5,-1517.5 "/> +<text text-anchor="start" x="731.5" y="-1502.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="731.5" y="-1487.3" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="731.5" y="-1472.3" font-family="Times,serif" font-size="14.00">- SnpName</text> +<text text-anchor="start" x="731.5" y="-1457.3" font-family="Times,serif" font-size="14.00">- Rs</text> +<text text-anchor="start" x="731.5" y="-1442.3" font-family="Times,serif" font-size="14.00">- Chromosome</text> +<text text-anchor="start" x="731.5" y="-1427.3" font-family="Times,serif" font-size="14.00">- Position</text> +<text text-anchor="start" x="731.5" y="-1412.3" font-family="Times,serif" font-size="14.00">- Position_2016</text> +<text text-anchor="start" x="731.5" y="-1397.3" font-family="Times,serif" font-size="14.00">- Alleles</text> +<text text-anchor="start" x="731.5" y="-1382.3" font-family="Times,serif" font-size="14.00">- Source</text> +<text text-anchor="start" x="731.5" y="-1367.3" font-family="Times,serif" font-size="14.00">- ConservationScore</text> +<text text-anchor="start" x="731.5" y="-1352.3" font-family="Times,serif" font-size="14.00">- 3Prime_UTR</text> +<text text-anchor="start" x="731.5" y="-1337.3" font-family="Times,serif" font-size="14.00">- 5Prime_UTR</text> +<text text-anchor="start" x="731.5" y="-1322.3" font-family="Times,serif" font-size="14.00">- Upstream</text> +<text text-anchor="start" x="731.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- Downstream</text> +<text text-anchor="start" x="731.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- Intron</text> +<text text-anchor="start" x="731.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- Non_Splice_Site</text> +<text text-anchor="start" x="731.5" y="-1262.3" font-family="Times,serif" font-size="14.00">- Splice_Site</text> +<text text-anchor="start" x="731.5" y="-1247.3" font-family="Times,serif" font-size="14.00">- Intergenic</text> +<text text-anchor="start" x="731.5" y="-1232.3" font-family="Times,serif" font-size="14.00">- Exon</text> +<text text-anchor="start" x="731.5" y="-1217.3" font-family="Times,serif" font-size="14.00">- Non_Synonymous_Coding</text> +<text text-anchor="start" x="731.5" y="-1202.3" font-family="Times,serif" font-size="14.00">- Synonymous_Coding</text> +<text text-anchor="start" x="731.5" y="-1187.3" font-family="Times,serif" font-size="14.00">- Start_Gained</text> +<text text-anchor="start" x="731.5" y="-1172.3" font-family="Times,serif" font-size="14.00">- Start_Lost</text> +<text text-anchor="start" x="731.5" y="-1157.3" font-family="Times,serif" font-size="14.00">- Stop_Gained</text> +<text text-anchor="start" x="731.5" y="-1142.3" font-family="Times,serif" font-size="14.00">- Stop_Lost</text> +<text text-anchor="start" x="731.5" y="-1127.3" font-family="Times,serif" font-size="14.00">- Unknown_Effect_In_Exon</text> +<text text-anchor="start" x="731.5" y="-1112.3" font-family="Times,serif" font-size="14.00">- Domain</text> +<text text-anchor="start" x="731.5" y="-1097.3" font-family="Times,serif" font-size="14.00">- Gene</text> +<text text-anchor="start" x="731.5" y="-1082.3" font-family="Times,serif" font-size="14.00">- Transcript</text> +</g> +<!-- node49 --> +<g id="node43" class="node"> +<title>node49</title> +<polygon fill="white" stroke="black" points="767,-1585 767,-1736 889,-1736 889,-1585 767,-1585"/> +<text text-anchor="middle" x="828" y="-1720.8" font-family="Times,serif" font-size="14.00">Species</text> +<polyline fill="none" stroke="black" points="767,-1713 889,-1713 "/> +<text text-anchor="start" x="775" y="-1697.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="775" y="-1682.8" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="775" y="-1667.8" font-family="Times,serif" font-size="14.00">- SpeciesName</text> +<text text-anchor="start" x="775" y="-1652.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="775" y="-1637.8" font-family="Times,serif" font-size="14.00">- MenuName</text> +<text text-anchor="start" x="775" y="-1622.8" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="775" y="-1607.8" font-family="Times,serif" font-size="14.00">- TaxonomyId</text> +<text text-anchor="start" x="775" y="-1592.8" font-family="Times,serif" font-size="14.00">- OrderId</text> +</g> +<!-- node49->node11 --> +<g id="edge32" class="edge"> +<title>node49->node11</title> +<path fill="none" stroke="black" d="M767.26,-1584.63C764.23,-1581.95 761.13,-1579.39 758,-1577 727.98,-1554.07 705.25,-1569.97 681,-1541 636.84,-1488.26 623.84,-1407.18 620.18,-1356.03"/> +<polygon fill="black" stroke="black" points="623.67,-1355.67 619.55,-1345.91 616.68,-1356.11 623.67,-1355.67"/> +</g> +<!-- node49->node12 --> +<g id="edge33" class="edge"> +<title>node49->node12</title> +<path fill="none" stroke="black" d="M770.56,-1584.74C766.54,-1581.83 762.35,-1579.21 758,-1577 661.47,-1527.9 357.39,-1607.61 272,-1541 227.21,-1506.06 208.2,-1444.27 200.26,-1393.17"/> +<polygon fill="none" stroke="black" points="203.7,-1392.51 198.81,-1383.1 196.77,-1393.5 203.7,-1392.51"/> +</g> +<!-- node49->node14 --> +<g id="edge34" class="edge"> +<title>node49->node14</title> +<path fill="none" stroke="black" d="M766.85,-1585.98C763.91,-1582.9 760.95,-1579.9 758,-1577 739.97,-1559.29 725.76,-1563.36 714,-1541 665.52,-1448.83 745.07,-1151.04 675,-1074 614.23,-1007.18 543.04,-1097.39 475,-1038 474.52,-1037.58 474.05,-1037.16 473.58,-1036.74"/> +<polygon fill="black" stroke="black" points="475.81,-1034.04 466.15,-1029.7 471,-1039.12 475.81,-1034.04"/> +</g> +<!-- node49->node15 --> +<g id="edge35" class="edge"> +<title>node49->node15</title> +<path fill="none" stroke="black" d="M771.07,-1584.98C766.9,-1581.96 762.54,-1579.26 758,-1577 630.27,-1513.45 227.83,-1630.84 117,-1541 83.84,-1514.12 67.11,-1471.72 58.97,-1430.44"/> +<polygon fill="black" stroke="black" points="62.41,-1429.76 57.18,-1420.54 55.52,-1431.01 62.41,-1429.76"/> +</g> +<!-- node49->node16 --> +<g id="edge36" class="edge"> +<title>node49->node16</title> +<path fill="none" stroke="black" d="M770.47,-1584.91C766.48,-1581.96 762.32,-1579.29 758,-1577 691.63,-1541.86 480.26,-1588.38 422,-1541 376.03,-1503.62 357.9,-1437.81 350.91,-1385.72"/> +<polygon fill="black" stroke="black" points="354.35,-1385 349.66,-1375.5 347.4,-1385.85 354.35,-1385"/> +</g> +<!-- node49->node17 --> +<g id="edge37" class="edge"> +<title>node49->node17</title> +<path fill="none" stroke="black" d="M889.29,-1649.97C986.8,-1633.79 1182.45,-1597.13 1341,-1541 1483.39,-1490.59 1639.05,-1409.38 1732.58,-1357.5"/> +<polygon fill="black" stroke="black" points="1734.4,-1360.49 1741.43,-1352.57 1730.99,-1354.38 1734.4,-1360.49"/> +</g> +<!-- node49->node22 --> +<g id="edge38" class="edge"> +<title>node49->node22</title> +<path fill="none" stroke="black" d="M889.22,-1659.39C1128.57,-1658.2 2000.19,-1646.56 2252,-1541 2322.14,-1511.59 2387.19,-1456.8 2435.86,-1407.79"/> +<polygon fill="none" stroke="black" points="2438.41,-1410.19 2442.92,-1400.61 2433.41,-1405.29 2438.41,-1410.19"/> +</g> +<!-- node49->node23 --> +<g id="edge39" class="edge"> +<title>node49->node23</title> +<path fill="none" stroke="black" d="M889.13,-1605.65C907.81,-1586.71 927.07,-1564.3 941,-1541 961.15,-1507.29 976.66,-1467.59 988.26,-1430.63"/> +<polygon fill="none" stroke="black" points="991.69,-1431.38 991.27,-1420.79 984.99,-1429.33 991.69,-1431.38"/> +</g> +<!-- node49->node48 --> +<g id="edge40" class="edge"> +<title>node49->node48</title> +<path fill="none" stroke="black" d="M828,-1584.63C828,-1574.01 828,-1562.66 828,-1550.82"/> +<polygon fill="none" stroke="black" points="831.5,-1550.77 828,-1540.77 824.5,-1550.77 831.5,-1550.77"/> +</g> +<!-- node50 --> +<g id="node44" class="node"> +<title>node50</title> +<polygon fill="white" stroke="black" points="1237.5,-1247 1237.5,-1368 1332.5,-1368 1332.5,-1247 1237.5,-1247"/> +<text text-anchor="middle" x="1285" y="-1352.8" font-family="Times,serif" font-size="14.00">Strain</text> +<polyline fill="none" stroke="black" points="1237.5,-1345 1332.5,-1345 "/> +<text text-anchor="start" x="1245.5" y="-1329.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1245.5" y="-1314.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="1245.5" y="-1299.8" font-family="Times,serif" font-size="14.00">- Name2</text> +<text text-anchor="start" x="1245.5" y="-1284.8" font-family="Times,serif" font-size="14.00">- SpeciesId</text> +<text text-anchor="start" x="1245.5" y="-1269.8" font-family="Times,serif" font-size="14.00">- Symbol</text> +<text text-anchor="start" x="1245.5" y="-1254.8" font-family="Times,serif" font-size="14.00">- Alias</text> +</g> +<!-- node49->node50 --> +<g id="edge41" class="edge"> +<title>node49->node50</title> +<path fill="none" stroke="black" d="M889.09,-1641C945.49,-1621.95 1029.71,-1588.35 1092,-1541 1152.33,-1495.14 1206.03,-1427 1241.37,-1376.33"/> +<polygon fill="black" stroke="black" points="1244.29,-1378.26 1247.1,-1368.04 1238.54,-1374.28 1244.29,-1378.26"/> +</g> +<!-- node50->node2 --> +<g id="edge42" class="edge"> +<title>node50->node2</title> +<path fill="none" stroke="black" d="M1237.32,-1258.22C1189.7,-1207.44 1117.63,-1123.21 1075,-1038 1041.67,-971.37 1021.71,-888.08 1010.86,-830.22"/> +<polygon fill="none" stroke="black" points="1014.24,-829.29 1009,-820.09 1007.36,-830.55 1014.24,-829.29"/> +</g> +<!-- node50->node4 --> +<g id="edge43" class="edge"> +<title>node50->node4</title> +<path fill="none" stroke="black" d="M1332.76,-1272.93C1411.6,-1219.6 1575.8,-1117.15 1732,-1074 1796.91,-1056.07 2283.93,-1079.46 2337,-1038 2404.79,-985.04 2420.88,-879.65 2424.06,-815.08"/> +<polygon fill="black" stroke="black" points="2427.56,-815.22 2424.47,-805.08 2420.57,-814.93 2427.56,-815.22"/> +</g> +<!-- node50->node5 --> +<g id="edge44" class="edge"> +<title>node50->node5</title> +<path fill="none" stroke="black" d="M1332.5,-1275.8C1411.95,-1225.86 1578.26,-1127.25 1732,-1074 1813.21,-1045.87 1853.42,-1089.8 1922,-1038 1994.96,-982.9 2032.26,-878.94 2049.13,-815.09"/> +<polygon fill="black" stroke="black" points="2052.57,-815.75 2051.66,-805.2 2045.79,-814.02 2052.57,-815.75"/> +</g> +<!-- node50->node18 --> +<g id="edge45" class="edge"> +<title>node50->node18</title> +<path fill="none" stroke="black" d="M1258.27,-1246.79C1235.11,-1193.07 1202.07,-1111.52 1181,-1038 1158.23,-958.55 1142.47,-863.46 1134.36,-807.74"/> +<polygon fill="black" stroke="black" points="1137.82,-807.21 1132.93,-797.81 1130.89,-808.2 1137.82,-807.21"/> +</g> +<!-- node50->node24 --> +<g id="edge46" class="edge"> +<title>node50->node24</title> +<path fill="none" stroke="black" d="M1254.06,-1246.76C1221.79,-1191.31 1165.61,-1111.82 1092,-1074 991.93,-1022.59 671.48,-1112.31 587,-1038 521.98,-980.81 519.93,-870.89 524.98,-807.92"/> +<polygon fill="black" stroke="black" points="528.47,-808.13 525.87,-797.86 521.5,-807.5 528.47,-808.13"/> +</g> +<!-- node50->node28 --> +<g id="edge47" class="edge"> +<title>node50->node28</title> +<path fill="none" stroke="black" d="M1279.2,-1246.77C1268.58,-1137.33 1246.2,-906.81 1236.57,-807.57"/> +<polygon fill="none" stroke="black" points="1240.05,-807.15 1235.6,-797.54 1233.08,-807.83 1240.05,-807.15"/> +</g> +<!-- node50->node33 --> +<g id="edge48" class="edge"> +<title>node50->node33</title> +<path fill="none" stroke="black" d="M1290.8,-1246.77C1301.42,-1137.33 1323.8,-906.81 1333.43,-807.57"/> +<polygon fill="black" stroke="black" points="1336.92,-807.83 1334.4,-797.54 1329.95,-807.15 1336.92,-807.83"/> +</g> +<!-- node50->node36 --> +<g id="edge49" class="edge"> +<title>node50->node36</title> +<path fill="none" stroke="black" d="M1312.99,-1246.94C1337.2,-1193.32 1371.6,-1111.84 1393,-1038 1415.98,-958.72 1430.8,-863.57 1438.25,-807.8"/> +<polygon fill="black" stroke="black" points="1441.73,-808.23 1439.56,-797.86 1434.79,-807.32 1441.73,-808.23"/> +</g> +<!-- node50->node38 --> +<g id="edge50" class="edge"> +<title>node50->node38</title> +<path fill="none" stroke="black" d="M1332.57,-1286.63C1414.1,-1250.03 1580.05,-1164.01 1666,-1038 1713.99,-967.64 1728.19,-866.84 1732.35,-808.08"/> +<polygon fill="black" stroke="black" points="1735.85,-808.16 1732.99,-797.96 1728.86,-807.72 1735.85,-808.16"/> +</g> +<!-- node50->node40 --> +<g id="edge51" class="edge"> +<title>node50->node40</title> +<path fill="none" stroke="black" d="M1332.59,-1281.76C1460.27,-1215.37 1800.75,-1038.33 1801,-1038 1852.79,-970.4 1862.47,-867.78 1863.28,-808.11"/> +<polygon fill="black" stroke="black" points="1866.78,-807.86 1863.34,-797.84 1859.78,-807.82 1866.78,-807.86"/> +</g> +<!-- node50->node44 --> +<g id="edge52" class="edge"> +<title>node50->node44</title> +<path fill="none" stroke="black" d="M1253.72,-1246.86C1221.28,-1191.69 1165.06,-1112.58 1092,-1074 1016.41,-1034.08 773.04,-1094.63 709,-1038 643.89,-980.43 639.51,-870.66 643.11,-807.81"/> +<polygon fill="black" stroke="black" points="646.6,-807.97 643.77,-797.77 639.62,-807.51 646.6,-807.97"/> +</g> +<!-- node50->node46 --> +<g id="edge53" class="edge"> +<title>node50->node46</title> +<path fill="none" stroke="black" d="M1253.09,-1246.93C1220.37,-1192.21 1164.12,-1113.78 1092,-1074 984.07,-1014.46 906.82,-1122.42 817,-1038 754.15,-978.94 752.14,-870.21 757.06,-807.83"/> +<polygon fill="black" stroke="black" points="760.55,-808.13 757.94,-797.86 753.57,-807.51 760.55,-808.13"/> +</g> +<!-- node50->node51 --> +<g id="edge54" class="edge"> +<title>node50->node51</title> +<path fill="none" stroke="black" d="M1332.57,-1273.58C1411.45,-1220.92 1576.13,-1119.1 1732,-1074 1823.9,-1047.41 2086.23,-1097.69 2161,-1038 2225.58,-986.44 2243.57,-887.55 2248.13,-822.81"/> +<polygon fill="black" stroke="black" points="2251.63,-822.92 2248.75,-812.73 2244.64,-822.49 2251.63,-822.92"/> +</g> +<!-- node55 --> +<g id="node47" class="node"> +<title>node55</title> +<polygon fill="white" stroke="black" points="826.5,-706.5 826.5,-812.5 915.5,-812.5 915.5,-706.5 826.5,-706.5"/> +<text text-anchor="middle" x="871" y="-797.3" font-family="Times,serif" font-size="14.00">TempData</text> +<polyline fill="none" stroke="black" points="826.5,-789.5 915.5,-789.5 "/> +<text text-anchor="start" x="834.5" y="-774.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="834.5" y="-759.3" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="834.5" y="-744.3" font-family="Times,serif" font-size="14.00">- value</text> +<text text-anchor="start" x="834.5" y="-729.3" font-family="Times,serif" font-size="14.00">- SE</text> +<text text-anchor="start" x="834.5" y="-714.3" font-family="Times,serif" font-size="14.00">- NStrain</text> +</g> +<!-- node50->node55 --> +<g id="edge55" class="edge"> +<title>node50->node55</title> +<path fill="none" stroke="black" d="M1251.54,-1246.93C1218.18,-1193.21 1161.89,-1116.32 1092,-1074 1026.68,-1034.44 977.39,-1092.6 924,-1038 868.62,-981.36 862.02,-885.74 864.7,-822.86"/> +<polygon fill="black" stroke="black" points="868.2,-822.84 865.22,-812.68 861.21,-822.48 868.2,-822.84"/> +</g> +<!-- node57 --> +<g id="node49" class="node"> +<title>node57</title> +<polygon fill="white" stroke="black" points="1504.5,-684 1504.5,-835 1657.5,-835 1657.5,-684 1504.5,-684"/> +<text text-anchor="middle" x="1581" y="-819.8" font-family="Times,serif" font-size="14.00">TissueProbeFreeze</text> +<polyline fill="none" stroke="black" points="1504.5,-812 1657.5,-812 "/> +<text text-anchor="start" x="1512.5" y="-796.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1512.5" y="-781.8" font-family="Times,serif" font-size="14.00">- ChipId</text> +<text text-anchor="start" x="1512.5" y="-766.8" font-family="Times,serif" font-size="14.00">- StrainId</text> +<text text-anchor="start" x="1512.5" y="-751.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="1512.5" y="-736.8" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="1512.5" y="-721.8" font-family="Times,serif" font-size="14.00">- ShortName</text> +<text text-anchor="start" x="1512.5" y="-706.8" font-family="Times,serif" font-size="14.00">- CreateTime</text> +<text text-anchor="start" x="1512.5" y="-691.8" font-family="Times,serif" font-size="14.00">- InbredSetId</text> +</g> +<!-- node50->node57 --> +<g id="edge56" class="edge"> +<title>node50->node57</title> +<path fill="none" stroke="black" d="M1332.92,-1256.94C1380.04,-1205.8 1451.1,-1121.89 1495,-1038 1526.99,-976.87 1549.35,-901.84 1563.23,-845.22"/> +<polygon fill="black" stroke="black" points="1566.7,-845.77 1565.64,-835.22 1559.9,-844.13 1566.7,-845.77"/> +</g> +<!-- node56 --> +<g id="node48" class="node"> +<title>node56</title> +<polygon fill="white" stroke="black" points="1880,-2253 1880,-2389 2020,-2389 2020,-2253 1880,-2253"/> +<text text-anchor="middle" x="1950" y="-2373.8" font-family="Times,serif" font-size="14.00">Tissue</text> +<polyline fill="none" stroke="black" points="1880,-2366 2020,-2366 "/> +<text text-anchor="start" x="1888" y="-2350.8" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1888" y="-2335.8" font-family="Times,serif" font-size="14.00">- TissueId</text> +<text text-anchor="start" x="1888" y="-2320.8" font-family="Times,serif" font-size="14.00">- TissueName</text> +<text text-anchor="start" x="1888" y="-2305.8" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="1888" y="-2290.8" font-family="Times,serif" font-size="14.00">- Short_Name</text> +<text text-anchor="start" x="1888" y="-2275.8" font-family="Times,serif" font-size="14.00">- BIRN_lex_ID</text> +<text text-anchor="start" x="1888" y="-2260.8" font-family="Times,serif" font-size="14.00">- BIRN_lex_Name</text> +</g> +<!-- node56->node34 --> +<g id="edge57" class="edge"> +<title>node56->node34</title> +<path fill="none" stroke="black" d="M2020.32,-2281.51C2231.98,-2165.65 2861.84,-1820.87 3078.68,-1702.18"/> +<polygon fill="black" stroke="black" points="3080.36,-1705.25 3087.45,-1697.38 3077,-1699.11 3080.36,-1705.25"/> +</g> +<!-- node58 --> +<g id="node50" class="node"> +<title>node58</title> +<polygon fill="white" stroke="black" points="587,-1622.5 587,-1698.5 749,-1698.5 749,-1622.5 587,-1622.5"/> +<text text-anchor="middle" x="668" y="-1683.3" font-family="Times,serif" font-size="14.00">TissueProbeSetData</text> +<polyline fill="none" stroke="black" points="587,-1675.5 749,-1675.5 "/> +<text text-anchor="start" x="595" y="-1660.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="595" y="-1645.3" font-family="Times,serif" font-size="14.00">- TissueID</text> +<text text-anchor="start" x="595" y="-1630.3" font-family="Times,serif" font-size="14.00">- value</text> +</g> +<!-- node56->node58 --> +<g id="edge58" class="edge"> +<title>node56->node58</title> +<path fill="none" stroke="black" d="M1879.67,-2294.38C1689.38,-2223.36 1152.2,-2011.4 758,-1744 741.72,-1732.96 725.41,-1719.08 711.24,-1705.87"/> +<polygon fill="black" stroke="black" points="713.27,-1702.96 703.6,-1698.62 708.45,-1708.04 713.27,-1702.96"/> +</g> +<!-- node59 --> +<g id="node51" class="node"> +<title>node59</title> +<polygon fill="white" stroke="black" points="1981.5,-248.5 1981.5,-444.5 2158.5,-444.5 2158.5,-248.5 1981.5,-248.5"/> +<text text-anchor="middle" x="2070" y="-429.3" font-family="Times,serif" font-size="14.00">TissueProbeSetFreeze</text> +<polyline fill="none" stroke="black" points="1981.5,-421.5 2158.5,-421.5 "/> +<text text-anchor="start" x="1989.5" y="-406.3" font-family="Times,serif" font-size="14.00">- Id</text> +<text text-anchor="start" x="1989.5" y="-391.3" font-family="Times,serif" font-size="14.00">- TissueProbeFreezeId</text> +<text text-anchor="start" x="1989.5" y="-376.3" font-family="Times,serif" font-size="14.00">- AvgID</text> +<text text-anchor="start" x="1989.5" y="-361.3" font-family="Times,serif" font-size="14.00">- Name</text> +<text text-anchor="start" x="1989.5" y="-346.3" font-family="Times,serif" font-size="14.00">- Name2</text> +<text text-anchor="start" x="1989.5" y="-331.3" font-family="Times,serif" font-size="14.00">- FullName</text> +<text text-anchor="start" x="1989.5" y="-316.3" font-family="Times,serif" font-size="14.00">- ShortName</text> +<text text-anchor="start" x="1989.5" y="-301.3" font-family="Times,serif" font-size="14.00">- CreateTime</text> +<text text-anchor="start" x="1989.5" y="-286.3" font-family="Times,serif" font-size="14.00">- public</text> +<text text-anchor="start" x="1989.5" y="-271.3" font-family="Times,serif" font-size="14.00">- confidentiality</text> +<text text-anchor="start" x="1989.5" y="-256.3" font-family="Times,serif" font-size="14.00">- AuthorisedUsers</text> +</g> +<!-- node57->node59 --> +<g id="edge59" class="edge"> +<title>node57->node59</title> +<path fill="none" stroke="black" d="M1585.66,-683.88C1593.4,-621.86 1613.76,-535.28 1667,-481 1747.71,-398.71 1880.2,-367.14 1971.09,-355.03"/> +<polygon fill="black" stroke="black" points="1971.66,-358.49 1981.14,-353.75 1970.77,-351.54 1971.66,-358.49"/> +</g> +<!-- node59->node60 --> +<g id="edge60" class="edge"> +<title>node59->node60</title> +<path fill="none" stroke="black" d="M2158.74,-289.8C2188.32,-273.7 2222.13,-257.84 2255,-248 2505.22,-173.09 3294.44,-127.4 3592.5,-112.44"/> +<polygon fill="black" stroke="black" points="3593.08,-115.92 3602.9,-111.92 3592.73,-108.93 3593.08,-115.92"/> +</g> +<!-- node61 --> +<g id="node53" class="node"> +<title>node61</title> +<polygon fill="white" stroke="black" points="3915.5,-3003.5 3915.5,-3064.5 4034.5,-3064.5 4034.5,-3003.5 3915.5,-3003.5"/> +<text text-anchor="middle" x="3975" y="-3049.3" font-family="Times,serif" font-size="14.00">TraitMetadata</text> +<polyline fill="none" stroke="black" points="3915.5,-3041.5 4034.5,-3041.5 "/> +<text text-anchor="start" x="3923.5" y="-3026.3" font-family="Times,serif" font-size="14.00">- type</text> +<text text-anchor="start" x="3923.5" y="-3011.3" font-family="Times,serif" font-size="14.00">- value</text> +</g> +<!-- node30 --> +<g id="node54" class="node"> +<title>node30</title> +<polygon fill="white" stroke="black" points="4846,-1277 4846,-1338 5006,-1338 5006,-1277 4846,-1277"/> +<text text-anchor="middle" x="4926" y="-1322.8" font-family="Times,serif" font-size="14.00">Organizations</text> +<polyline fill="none" stroke="black" points="4846,-1315 5006,-1315 "/> +<text text-anchor="start" x="4854" y="-1299.8" font-family="Times,serif" font-size="14.00">- OrganizationId</text> +<text text-anchor="start" x="4854" y="-1284.8" font-family="Times,serif" font-size="14.00">- OrganizationName</text> +</g> +<!-- node25 --> +<g id="node55" class="node"> +<title>node25</title> +<polygon fill="white" stroke="black" points="4867,-624 4867,-895 4999,-895 4999,-624 4867,-624"/> +<text text-anchor="middle" x="4933" y="-879.8" font-family="Times,serif" font-size="14.00">Investigators</text> +<polyline fill="none" stroke="black" points="4867,-872 4999,-872 "/> +<text text-anchor="start" x="4875" y="-856.8" font-family="Times,serif" font-size="14.00">- FirstName</text> +<text text-anchor="start" x="4875" y="-841.8" font-family="Times,serif" font-size="14.00">- LastName</text> +<text text-anchor="start" x="4875" y="-826.8" font-family="Times,serif" font-size="14.00">- Address</text> +<text text-anchor="start" x="4875" y="-811.8" font-family="Times,serif" font-size="14.00">- City</text> +<text text-anchor="start" x="4875" y="-796.8" font-family="Times,serif" font-size="14.00">- State</text> +<text text-anchor="start" x="4875" y="-781.8" font-family="Times,serif" font-size="14.00">- ZipCode</text> +<text text-anchor="start" x="4875" y="-766.8" font-family="Times,serif" font-size="14.00">- Phone</text> +<text text-anchor="start" x="4875" y="-751.8" font-family="Times,serif" font-size="14.00">- Email</text> +<text text-anchor="start" x="4875" y="-736.8" font-family="Times,serif" font-size="14.00">- Country</text> +<text text-anchor="start" x="4875" y="-721.8" font-family="Times,serif" font-size="14.00">- Url</text> +<text text-anchor="start" x="4875" y="-706.8" font-family="Times,serif" font-size="14.00">- UserName</text> +<text text-anchor="start" x="4875" y="-691.8" font-family="Times,serif" font-size="14.00">- UserPass</text> +<text text-anchor="start" x="4875" y="-676.8" font-family="Times,serif" font-size="14.00">- UserDate</text> +<text text-anchor="start" x="4875" y="-661.8" font-family="Times,serif" font-size="14.00">- UserLevel</text> +<text text-anchor="start" x="4875" y="-646.8" font-family="Times,serif" font-size="14.00">- OrganizationId</text> +<text text-anchor="start" x="4875" y="-631.8" font-family="Times,serif" font-size="14.00">- InvestigatorId</text> +</g> +<!-- node30->node25 --> +<g id="edge18" class="edge"> +<title>node30->node25</title> +<path fill="none" stroke="black" d="M4926.38,-1276.76C4927.27,-1207.64 4929.51,-1032.4 4931.14,-905.23"/> +<polygon fill="black" stroke="black" points="4934.65,-905.05 4931.28,-895.01 4927.65,-904.96 4934.65,-905.05"/> +</g> +<!-- node62 --> +<g id="node57" class="node"> +<title>node62</title> +<polygon fill="white" stroke="black" points="4562.5,-1217 4562.5,-1398 4665.5,-1398 4665.5,-1217 4562.5,-1217"/> +<text text-anchor="middle" x="4614" y="-1382.8" font-family="Times,serif" font-size="14.00">User</text> +<polyline fill="none" stroke="black" points="4562.5,-1375 4665.5,-1375 "/> +<text text-anchor="start" x="4570.5" y="-1359.8" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4570.5" y="-1344.8" font-family="Times,serif" font-size="14.00">- name</text> +<text text-anchor="start" x="4570.5" y="-1329.8" font-family="Times,serif" font-size="14.00">- password</text> +<text text-anchor="start" x="4570.5" y="-1314.8" font-family="Times,serif" font-size="14.00">- email</text> +<text text-anchor="start" x="4570.5" y="-1299.8" font-family="Times,serif" font-size="14.00">- createtime</text> +<text text-anchor="start" x="4570.5" y="-1284.8" font-family="Times,serif" font-size="14.00">- user_ip</text> +<text text-anchor="start" x="4570.5" y="-1269.8" font-family="Times,serif" font-size="14.00">- lastlogin</text> +<text text-anchor="start" x="4570.5" y="-1254.8" font-family="Times,serif" font-size="14.00">- disable</text> +<text text-anchor="start" x="4570.5" y="-1239.8" font-family="Times,serif" font-size="14.00">- privilege</text> +<text text-anchor="start" x="4570.5" y="-1224.8" font-family="Times,serif" font-size="14.00">- grpName</text> +</g> +<!-- node62->node63 --> +<g id="edge61" class="edge"> +<title>node62->node63</title> +<path fill="none" stroke="black" d="M4611.74,-1216.74C4605.82,-1168.38 4590.48,-1111.17 4553,-1074 4506.77,-1028.15 4471.02,-1063.23 4411,-1038 4258.65,-973.95 4097.4,-864.19 4013.83,-803.68"/> +<polygon fill="black" stroke="black" points="4015.64,-800.67 4005.5,-797.63 4011.53,-806.34 4015.64,-800.67"/> +</g> +<!-- node67 --> +<g id="node58" class="node"> +<title>node67</title> +<polygon fill="white" stroke="black" points="4684,-1224.5 4684,-1390.5 4828,-1390.5 4828,-1224.5 4684,-1224.5"/> +<text text-anchor="middle" x="4756" y="-1375.3" font-family="Times,serif" font-size="14.00">user</text> +<polyline fill="none" stroke="black" points="4684,-1367.5 4828,-1367.5 "/> +<text text-anchor="start" x="4692" y="-1352.3" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4692" y="-1337.3" font-family="Times,serif" font-size="14.00">- email_address</text> +<text text-anchor="start" x="4692" y="-1322.3" font-family="Times,serif" font-size="14.00">- password</text> +<text text-anchor="start" x="4692" y="-1307.3" font-family="Times,serif" font-size="14.00">- full_name</text> +<text text-anchor="start" x="4692" y="-1292.3" font-family="Times,serif" font-size="14.00">- organization</text> +<text text-anchor="start" x="4692" y="-1277.3" font-family="Times,serif" font-size="14.00">- active</text> +<text text-anchor="start" x="4692" y="-1262.3" font-family="Times,serif" font-size="14.00">- registration_info</text> +<text text-anchor="start" x="4692" y="-1247.3" font-family="Times,serif" font-size="14.00">- confirmed</text> +<text text-anchor="start" x="4692" y="-1232.3" font-family="Times,serif" font-size="14.00">- superuser</text> +</g> +<!-- node64 --> +<g id="node59" class="node"> +<title>node64</title> +<polygon fill="white" stroke="black" points="4735.5,-691.5 4735.5,-827.5 4848.5,-827.5 4848.5,-691.5 4735.5,-691.5"/> +<text text-anchor="middle" x="4792" y="-812.3" font-family="Times,serif" font-size="14.00">login</text> +<polyline fill="none" stroke="black" points="4735.5,-804.5 4848.5,-804.5 "/> +<text text-anchor="start" x="4743.5" y="-789.3" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4743.5" y="-774.3" font-family="Times,serif" font-size="14.00">- user</text> +<text text-anchor="start" x="4743.5" y="-759.3" font-family="Times,serif" font-size="14.00">- timestamp</text> +<text text-anchor="start" x="4743.5" y="-744.3" font-family="Times,serif" font-size="14.00">- ip_address</text> +<text text-anchor="start" x="4743.5" y="-729.3" font-family="Times,serif" font-size="14.00">- successful</text> +<text text-anchor="start" x="4743.5" y="-714.3" font-family="Times,serif" font-size="14.00">- session_id</text> +<text text-anchor="start" x="4743.5" y="-699.3" font-family="Times,serif" font-size="14.00">- assumed_by</text> +</g> +<!-- node67->node64 --> +<g id="edge62" class="edge"> +<title>node67->node64</title> +<path fill="none" stroke="black" d="M4761.41,-1224.46C4768.31,-1119.84 4780.15,-940.26 4786.9,-837.9"/> +<polygon fill="none" stroke="black" points="4790.41,-837.85 4787.57,-827.64 4783.42,-837.39 4790.41,-837.85"/> +</g> +<!-- node68 --> +<g id="node60" class="node"> +<title>node68</title> +<polygon fill="white" stroke="black" points="4419.5,-699 4419.5,-820 4588.5,-820 4588.5,-699 4419.5,-699"/> +<text text-anchor="middle" x="4504" y="-804.8" font-family="Times,serif" font-size="14.00">user_collection</text> +<polyline fill="none" stroke="black" points="4419.5,-797 4588.5,-797 "/> +<text text-anchor="start" x="4427.5" y="-781.8" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4427.5" y="-766.8" font-family="Times,serif" font-size="14.00">- user</text> +<text text-anchor="start" x="4427.5" y="-751.8" font-family="Times,serif" font-size="14.00">- name</text> +<text text-anchor="start" x="4427.5" y="-736.8" font-family="Times,serif" font-size="14.00">- created_timestamp</text> +<text text-anchor="start" x="4427.5" y="-721.8" font-family="Times,serif" font-size="14.00">- changed_timestamp</text> +<text text-anchor="start" x="4427.5" y="-706.8" font-family="Times,serif" font-size="14.00">- members</text> +</g> +<!-- node67->node68 --> +<g id="edge63" class="edge"> +<title>node67->node68</title> +<path fill="none" stroke="black" d="M4743.82,-1224.34C4732.93,-1175.7 4712.59,-1115.64 4675,-1074 4649.68,-1045.96 4623.19,-1066.15 4598,-1038 4545.86,-979.75 4522.45,-891.42 4512.06,-830.12"/> +<polygon fill="none" stroke="black" points="4515.5,-829.46 4510.44,-820.15 4508.59,-830.58 4515.5,-829.46"/> +</g> +<!-- node69 --> +<g id="node61" class="node"> +<title>node69</title> +<polygon fill="white" stroke="black" points="4607,-729 4607,-790 4717,-790 4717,-729 4607,-729"/> +<text text-anchor="middle" x="4662" y="-774.8" font-family="Times,serif" font-size="14.00">user_openids</text> +<polyline fill="none" stroke="black" points="4607,-767 4717,-767 "/> +<text text-anchor="start" x="4615" y="-751.8" font-family="Times,serif" font-size="14.00">- openid_url</text> +<text text-anchor="start" x="4615" y="-736.8" font-family="Times,serif" font-size="14.00">- user_id</text> +</g> +<!-- node67->node69 --> +<g id="edge64" class="edge"> +<title>node67->node69</title> +<path fill="none" stroke="black" d="M4741.88,-1224.46C4721.37,-1105.34 4684.13,-889.02 4668.83,-800.19"/> +<polygon fill="black" stroke="black" points="4672.27,-799.52 4667.12,-790.26 4665.37,-800.7 4672.27,-799.52"/> +</g> +<!-- node1 --> +<g id="node62" class="node"> +<title>node1</title> +<polygon fill="white" stroke="black" points="4440,-1269.5 4440,-1345.5 4544,-1345.5 4544,-1269.5 4440,-1269.5"/> +<text text-anchor="middle" x="4492" y="-1330.3" font-family="Times,serif" font-size="14.00">AccessLog</text> +<polyline fill="none" stroke="black" points="4440,-1322.5 4544,-1322.5 "/> +<text text-anchor="start" x="4448" y="-1307.3" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4448" y="-1292.3" font-family="Times,serif" font-size="14.00">- accesstime</text> +<text text-anchor="start" x="4448" y="-1277.3" font-family="Times,serif" font-size="14.00">- ip_address</text> +</g> +<!-- node9 --> +<g id="node63" class="node"> +<title>node9</title> +<polygon fill="white" stroke="black" points="4342,-1262 4342,-1353 4422,-1353 4422,-1262 4342,-1262"/> +<text text-anchor="middle" x="4382" y="-1337.8" font-family="Times,serif" font-size="14.00">Docs</text> +<polyline fill="none" stroke="black" points="4342,-1330 4422,-1330 "/> +<text text-anchor="start" x="4350" y="-1314.8" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4350" y="-1299.8" font-family="Times,serif" font-size="14.00">- entry</text> +<text text-anchor="start" x="4350" y="-1284.8" font-family="Times,serif" font-size="14.00">- title</text> +<text text-anchor="start" x="4350" y="-1269.8" font-family="Times,serif" font-size="14.00">- content</text> +</g> +<!-- node26 --> +<g id="node64" class="node"> +<title>node26</title> +<polygon fill="white" stroke="black" points="4172,-1247 4172,-1368 4324,-1368 4324,-1247 4172,-1247"/> +<text text-anchor="middle" x="4248" y="-1352.8" font-family="Times,serif" font-size="14.00">MachineAccessLog</text> +<polyline fill="none" stroke="black" points="4172,-1345 4324,-1345 "/> +<text text-anchor="start" x="4180" y="-1329.8" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4180" y="-1314.8" font-family="Times,serif" font-size="14.00">- accesstime</text> +<text text-anchor="start" x="4180" y="-1299.8" font-family="Times,serif" font-size="14.00">- ip_address</text> +<text text-anchor="start" x="4180" y="-1284.8" font-family="Times,serif" font-size="14.00">- db_id</text> +<text text-anchor="start" x="4180" y="-1269.8" font-family="Times,serif" font-size="14.00">- data_id</text> +<text text-anchor="start" x="4180" y="-1254.8" font-family="Times,serif" font-size="14.00">- action</text> +</g> +<!-- node29 --> +<g id="node65" class="node"> +<title>node29</title> +<polygon fill="white" stroke="black" points="4080,-1269.5 4080,-1345.5 4154,-1345.5 4154,-1269.5 4080,-1269.5"/> +<text text-anchor="middle" x="4117" y="-1330.3" font-family="Times,serif" font-size="14.00">News</text> +<polyline fill="none" stroke="black" points="4080,-1322.5 4154,-1322.5 "/> +<text text-anchor="start" x="4088" y="-1307.3" font-family="Times,serif" font-size="14.00">- id</text> +<text text-anchor="start" x="4088" y="-1292.3" font-family="Times,serif" font-size="14.00">- date</text> +<text text-anchor="start" x="4088" y="-1277.3" font-family="Times,serif" font-size="14.00">- details</text> +</g> +<!-- node52 --> +<g id="node66" class="node"> +<title>node52</title> +<polygon fill="white" stroke="black" points="3930.5,-1277 3930.5,-1338 4061.5,-1338 4061.5,-1277 3930.5,-1277"/> +<text text-anchor="middle" x="3996" y="-1322.8" font-family="Times,serif" font-size="14.00">TableComments</text> +<polyline fill="none" stroke="black" points="3930.5,-1315 4061.5,-1315 "/> +<text text-anchor="start" x="3938.5" y="-1299.8" font-family="Times,serif" font-size="14.00">- TableName</text> +<text text-anchor="start" x="3938.5" y="-1284.8" font-family="Times,serif" font-size="14.00">- Comment</text> +</g> +<!-- node53 --> +<g id="node67" class="node"> +<title>node53</title> +<polygon fill="white" stroke="black" points="3743.5,-1269.5 3743.5,-1345.5 3912.5,-1345.5 3912.5,-1269.5 3743.5,-1269.5"/> +<text text-anchor="middle" x="3828" y="-1330.3" font-family="Times,serif" font-size="14.00">TableFieldAnnotation</text> +<polyline fill="none" stroke="black" points="3743.5,-1322.5 3912.5,-1322.5 "/> +<text text-anchor="start" x="3751.5" y="-1307.3" font-family="Times,serif" font-size="14.00">- TableField</text> +<text text-anchor="start" x="3751.5" y="-1292.3" font-family="Times,serif" font-size="14.00">- Foreign_Key</text> +<text text-anchor="start" x="3751.5" y="-1277.3" font-family="Times,serif" font-size="14.00">- Annotation</text> +</g> +<!-- node65 --> +<g id="node68" class="node"> +<title>node65</title> +<polygon fill="white" stroke="black" points="3619,-1269.5 3619,-1345.5 3725,-1345.5 3725,-1269.5 3619,-1269.5"/> +<text text-anchor="middle" x="3672" y="-1330.3" font-family="Times,serif" font-size="14.00">role</text> +<polyline fill="none" stroke="black" points="3619,-1322.5 3725,-1322.5 "/> +<text text-anchor="start" x="3627" y="-1307.3" font-family="Times,serif" font-size="14.00">- the_id</text> +<text text-anchor="start" x="3627" y="-1292.3" font-family="Times,serif" font-size="14.00">- name</text> +<text text-anchor="start" x="3627" y="-1277.3" font-family="Times,serif" font-size="14.00">- description</text> +</g> +<!-- node66 --> +<g id="node69" class="node"> +<title>node66</title> +<polygon fill="white" stroke="black" points="3503,-1277 3503,-1338 3601,-1338 3601,-1277 3503,-1277"/> +<text text-anchor="middle" x="3552" y="-1322.8" font-family="Times,serif" font-size="14.00">roles_users</text> +<polyline fill="none" stroke="black" points="3503,-1315 3601,-1315 "/> +<text text-anchor="start" x="3511" y="-1299.8" font-family="Times,serif" font-size="14.00">- user_id</text> +<text text-anchor="start" x="3511" y="-1284.8" font-family="Times,serif" font-size="14.00">- role_id</text> +</g> +</g> +</svg> diff --git a/sql/README.md b/sql/update/README.md index 2f93d1c..2f93d1c 100644 --- a/sql/README.md +++ b/sql/update/README.md diff --git a/sql/metadata_audit.sql b/sql/update/metadata_audit.sql index 514a2fc..514a2fc 100644 --- a/sql/metadata_audit.sql +++ b/sql/update/metadata_audit.sql |
