diff options
| -rw-r--r-- | gn3/api/correlation.py | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py index 46121f8..e936eaf 100644 --- a/gn3/api/correlation.py +++ b/gn3/api/correlation.py @@ -8,6 +8,7 @@ from gn3.computations.correlations import compute_all_lit_correlation from gn3.computations.correlations import compute_tissue_correlation from gn3.computations.correlations import map_shared_keys_to_values from gn3.db_utils import database_connector +from gn3.computations.partial_correlations import partial_correlations_entry correlation = Blueprint("correlation", __name__) @@ -83,3 +84,18 @@ def compute_tissue_corr(corr_method="pearson"): corr_method=corr_method) return jsonify(results) + +@correlation.route("/partial", methods=["POST"]) +def partial_correlation(): + def trait_fullname(trait): + return f"{trait['dataset']}::{trait['name']}" + + args = request.get_json() + conn, _cursor_object = database_connector() + corr_results = partial_correlations_entry( + conn, trait_fullname(args["primary_trait"]), + tuple(trait_fullname(trait) for trait in args["control_traits"]), + args["method"], int(args["criteria"]), args["target_db"]) + return make_response( + jsonify(corr_results), + 400) |