diff options
| -rw-r--r-- | gn3/computations/correlations.py | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index 857ceb0..25dd26d 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -89,8 +89,6 @@ def compute_sample_r_correlation(trait_name, corr_method, trait_vals, target_values=sanitized_target_vals, corr_method=corr_method) - # xtodo check if corr_coefficient is None - # should use numpy.isNan scipy.isNan is deprecated if corr_coeffient is not None: return (trait_name, corr_coeffient, p_value, num_overlap) return None @@ -187,7 +185,8 @@ def benchmark_compute_all_sample(this_trait, } corr_results.append({trait_name: corr_result}) return corr_results - + + def tissue_correlation_for_trait( primary_tissue_vals: List, target_tissues_values: List, @@ -298,8 +297,6 @@ def map_to_mouse_gene_id(conn, species: Optional[str], gene_id: Optional[str]) -> Optional[str]: """Given a species which is not mouse map the gene_id\ to respective mouse gene id""" - # AK:xtodo move the code for checking nullity out of thing functions bug - # while method for string if None in (species, gene_id): return None if species == "mouse": |