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authorAlexander_Kabui2022-12-06 00:15:40 +0300
committerAlexander_Kabui2022-12-06 00:15:40 +0300
commit3df5321304435f601ae6f5f1865957cbc5a90ef7 (patch)
treeaa8bddff4b33ccb6a9f857324699b75cd8d6eff8 /tests
parent156e6e4c372f3b4c24d5c07c02603a29d0d95412 (diff)
downloadgenenetwork3-3df5321304435f601ae6f5f1865957cbc5a90ef7.tar.gz
update tests for lit correlation
Diffstat (limited to 'tests')
-rw-r--r--tests/unit/computations/test_correlation.py23
1 files changed, 9 insertions, 14 deletions
diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py
index e8d4f75..d928239 100644
--- a/tests/unit/computations/test_correlation.py
+++ b/tests/unit/computations/test_correlation.py
@@ -58,12 +58,12 @@ class DataBase(QueryableMixin):
"""expects the expectede results value to be an array"""
self.password = password
self.db_name = db_name
- self.__query_options = None # pylint: disable=[W0238]
+ self.__query_options = None # pylint: disable=[W0238]
self.results_generator(expected_results)
def execute(self, query_options):
"""method to execute an sql query"""
- self.__query_options = query_options # pylint: disable=[W0238]
+ self.__query_options = query_options # pylint: disable=[W0238]
return 1
def cursor(self):
@@ -118,11 +118,9 @@ class TestCorrelation(TestCase):
primary_values = [2.3, 4.1, 5, 4.2, None, None, 4, 1.2, 1.1]
target_values = [3.4, 6.2, 4, 1.1, 1.2, None, 8, 1.1, 2.1]
-
norm_vals.return_value = iter(
[(2.3, 3.4), (4.1, 6.2), (5, 4), (4.2, 1.1), (4, 8), (1.2, 1.1), (1.1, 2.1)])
-
compute_corr.return_value = (0.8, 0.21)
bicor_results = compute_sample_r_correlation(trait_name="1412_at",
@@ -130,7 +128,6 @@ class TestCorrelation(TestCase):
trait_vals=primary_values,
target_samples_vals=target_values)
-
self.assertEqual(bicor_results, ("1412_at", 0.8, 0.21, 7))
@pytest.mark.unit_test
@@ -266,7 +263,7 @@ class TestCorrelation(TestCase):
input_mouse_gene_id=None,
mouse_gene_id=None)
- self.assertEqual(results, ("1", 0))
+ self.assertEqual(results, ("1", None))
@pytest.mark.unit_test
def test_fetch_lit_correlation_data_db_query(self):
@@ -288,19 +285,17 @@ class TestCorrelation(TestCase):
@pytest.mark.unit_test
def test_query_lit_correlation_for_db_empty(self):
- """Test that corr coeffient returned is 0 given the\
+ """Test that corr coeffient returned is None given the\
db value if corr coefficient is empty
"""
conn = mock.Mock()
conn.cursor.return_value = DataBase()
- conn.execute.return_value.fetchone.return_value = None
-
- lit_results = fetch_lit_correlation_data(conn=conn,
- input_mouse_gene_id="12",
- gene_id="16",
- mouse_gene_id="12")
+ conn.execute.return_value.fetchone.return_value = ""
- self.assertEqual(lit_results, ("16", 0))
+ self.assertEqual(fetch_lit_correlation_data(conn=conn,
+ input_mouse_gene_id="12",
+ gene_id="16",
+ mouse_gene_id="12"), ("16", None))
@pytest.mark.unit_test
def test_query_formatter(self):